Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00890

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiP and NIAGMN_00890 are separated by 102 nucleotidesNIAGMN_00890 and ydiQ are separated by 36 nucleotidesydiQ and ydiR are separated by 19 nucleotides NIAGMN_00885: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 153,675 to 154,586 ydiP NIAGMN_00890: NIAGMN_00890 - hypothetical protein, at 154,689 to 154,865 _00890 NIAGMN_00895: ydiQ - electron transfer flavoprotein, at 154,902 to 155,666 ydiQ NIAGMN_00900: ydiR - electron transfer flavoprotein subunit alpha, at 155,686 to 156,624 ydiR Position (kb) 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 153.908 kb on + strand, within ydiPat 154.368 kb on + strand, within ydiPat 154.380 kb on - strand, within ydiPat 154.402 kb on - strand, within ydiPat 154.658 kb on + strandat 154.733 kb on - strand, within NIAGMN_00890at 155.146 kb on - strand, within ydiQat 155.672 kb on - strandat 155.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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153,908 + ydiP NIAGMN_00885 0.26 +1.0
154,368 + ydiP NIAGMN_00885 0.76 -0.7
154,380 - ydiP NIAGMN_00885 0.77 -0.6
154,402 - ydiP NIAGMN_00885 0.80 -1.6
154,658 + -1.7
154,733 - NIAGMN_00890 0.25 -2.5
155,146 - ydiQ NIAGMN_00895 0.32 +2.6
155,672 - +0.6
155,779 + +0.6

Or see this region's nucleotide sequence