Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00875

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiB and aroD are separated by 30 nucleotidesaroD and ydiF are separated by 144 nucleotidesydiF and ydiO are separated by 13 nucleotides NIAGMN_00865: ydiB - quinate/shikimate dehydrogenase, at 149,072 to 149,938 ydiB NIAGMN_00870: aroD - 3-dehydroquinate dehydratase, at 149,969 to 150,727 aroD NIAGMN_00875: ydiF - Acetate CoA-transferase YdiF, at 150,872 to 152,467 ydiF NIAGMN_00880: ydiO - acyl-CoA dehydrogenase, at 152,481 to 153,632 ydiO Position (kb) 150 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 149.980 kb on - strandat 150.016 kb on + strandat 150.301 kb on + strand, within aroDat 150.896 kb on - strandat 151.231 kb on - strand, within ydiFat 151.648 kb on - strand, within ydiFat 152.877 kb on - strand, within ydiOat 152.970 kb on + strand, within ydiOat 152.972 kb on + strand, within ydiOat 153.066 kb on - strand, within ydiOat 153.092 kb on + strand, within ydiO

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
149,980 - -2.9
150,016 + -2.8
150,301 + aroD NIAGMN_00870 0.44 -0.2
150,896 - +3.0
151,231 - ydiF NIAGMN_00875 0.22 -1.4
151,648 - ydiF NIAGMN_00875 0.49 +1.5
152,877 - ydiO NIAGMN_00880 0.34 +1.5
152,970 + ydiO NIAGMN_00880 0.42 -0.4
152,972 + ydiO NIAGMN_00880 0.43 +0.1
153,066 - ydiO NIAGMN_00880 0.51 +1.0
153,092 + ydiO NIAGMN_00880 0.53 -0.3

Or see this region's nucleotide sequence