Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00700

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcfa and ribE are separated by 39 nucleotidesribE and mdtK are separated by 214 nucleotides NIAGMN_00695: cfa - cyclopropane fatty acyl phospholipid synthase, at 116,695 to 117,843 cfa NIAGMN_00700: ribE - riboflavin synthase, at 117,883 to 118,524 ribE NIAGMN_00705: mdtK - multidrug efflux MATE transporter MdtK, at 118,739 to 120,112 mdtK Position (kb) 117 118 119Strain fitness (log2 ratio) -1 0 1 2at 116.913 kb on + strand, within cfaat 117.104 kb on - strand, within cfaat 117.244 kb on + strand, within cfaat 117.245 kb on - strand, within cfaat 117.245 kb on - strand, within cfaat 117.255 kb on + strand, within cfaat 117.256 kb on - strand, within cfaat 117.651 kb on + strand, within cfaat 117.710 kb on - strand, within cfaat 117.739 kb on + strandat 117.848 kb on + strandat 118.715 kb on + strandat 118.715 kb on + strandat 118.726 kb on - strandat 118.750 kb on + strandat 118.751 kb on - strandat 118.780 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
116,913 + cfa NIAGMN_00695 0.19 -1.6
117,104 - cfa NIAGMN_00695 0.36 +2.1
117,244 + cfa NIAGMN_00695 0.48 +0.4
117,245 - cfa NIAGMN_00695 0.48 +0.6
117,245 - cfa NIAGMN_00695 0.48 +0.8
117,255 + cfa NIAGMN_00695 0.49 +1.0
117,256 - cfa NIAGMN_00695 0.49 +0.6
117,651 + cfa NIAGMN_00695 0.83 -0.4
117,710 - cfa NIAGMN_00695 0.88 +0.2
117,739 + +0.1
117,848 + +1.4
118,715 + -0.4
118,715 + +2.4
118,726 - -1.0
118,750 + +1.1
118,751 - -0.2
118,780 - +1.9

Or see this region's nucleotide sequence