Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00610

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhK and sodC are separated by 0 nucleotidessodC and ydhF are separated by 188 nucleotides NIAGMN_00605: ydhK - Uncharacterized transporter YdhK, at 97,418 to 99,430 ydhK NIAGMN_00610: sodC - superoxide dismutase [Cu-Zn] SodC, at 99,431 to 99,952 sodC NIAGMN_00615: ydhF - Oxidoreductase YdhF, at 100,141 to 100,929 ydhF Position (kb) 99 100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 98.494 kb on + strand, within ydhKat 98.635 kb on + strand, within ydhKat 99.121 kb on - strand, within ydhKat 99.134 kb on - strand, within ydhKat 99.136 kb on - strand, within ydhKat 99.223 kb on + strand, within ydhKat 99.297 kb on + strandat 99.436 kb on + strandat 99.436 kb on + strandat 99.441 kb on - strandat 99.596 kb on - strand, within sodCat 99.661 kb on + strand, within sodCat 99.989 kb on - strandat 99.989 kb on - strandat 100.062 kb on + strandat 100.373 kb on - strand, within ydhFat 100.552 kb on + strand, within ydhFat 100.609 kb on - strand, within ydhFat 100.683 kb on + strand, within ydhFat 100.911 kb on + strandat 100.912 kb on - strandat 100.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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98,494 + ydhK NIAGMN_00605 0.53 -1.6
98,635 + ydhK NIAGMN_00605 0.60 -2.3
99,121 - ydhK NIAGMN_00605 0.85 +0.2
99,134 - ydhK NIAGMN_00605 0.85 -0.2
99,136 - ydhK NIAGMN_00605 0.85 -1.7
99,223 + ydhK NIAGMN_00605 0.90 +0.4
99,297 + -1.4
99,436 + +1.9
99,436 + -0.3
99,441 - +3.1
99,596 - sodC NIAGMN_00610 0.32 -0.9
99,661 + sodC NIAGMN_00610 0.44 -2.2
99,989 - -2.9
99,989 - +1.2
100,062 + -1.3
100,373 - ydhF NIAGMN_00615 0.29 -0.4
100,552 + ydhF NIAGMN_00615 0.52 -0.5
100,609 - ydhF NIAGMN_00615 0.59 -4.0
100,683 + ydhF NIAGMN_00615 0.69 -0.5
100,911 + -2.5
100,912 - -1.6
100,951 - -3.2

Or see this region's nucleotide sequence