Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00375

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdtI and mdtJ overlap by 14 nucleotidesmdtJ and tqsA are separated by 411 nucleotidestqsA and pntB are separated by 24 nucleotides NIAGMN_00365: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 50,899 to 51,228 mdtI NIAGMN_00370: mdtJ - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 51,215 to 51,580 mdtJ NIAGMN_00375: tqsA - AI-2 transporter TqsA, at 51,992 to 53,026 tqsA NIAGMN_00380: pntB - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 53,051 to 54,439 pntB Position (kb) 51 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 51.122 kb on - strand, within mdtIat 51.444 kb on - strand, within mdtJat 51.576 kb on + strandat 51.661 kb on - strandat 51.795 kb on - strandat 52.230 kb on + strand, within tqsAat 52.231 kb on - strand, within tqsAat 52.291 kb on + strand, within tqsAat 52.426 kb on + strand, within tqsAat 52.695 kb on - strand, within tqsAat 52.706 kb on - strand, within tqsAat 53.148 kb on + strandat 53.216 kb on - strand, within pntBat 53.344 kb on - strand, within pntBat 53.349 kb on - strand, within pntBat 53.497 kb on - strand, within pntBat 53.666 kb on - strand, within pntBat 53.861 kb on + strand, within pntB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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51,122 - mdtI NIAGMN_00365 0.68 -3.7
51,444 - mdtJ NIAGMN_00370 0.63 -0.9
51,576 + +1.7
51,661 - -0.1
51,795 - -2.4
52,230 + tqsA NIAGMN_00375 0.23 -0.4
52,231 - tqsA NIAGMN_00375 0.23 +0.7
52,291 + tqsA NIAGMN_00375 0.29 +1.7
52,426 + tqsA NIAGMN_00375 0.42 +1.7
52,695 - tqsA NIAGMN_00375 0.68 -0.9
52,706 - tqsA NIAGMN_00375 0.69 -0.9
53,148 + -0.7
53,216 - pntB NIAGMN_00380 0.12 +0.4
53,344 - pntB NIAGMN_00380 0.21 -0.9
53,349 - pntB NIAGMN_00380 0.21 -0.3
53,497 - pntB NIAGMN_00380 0.32 -1.5
53,666 - pntB NIAGMN_00380 0.44 -1.7
53,861 + pntB NIAGMN_00380 0.58 +2.4

Or see this region's nucleotide sequence