Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgU and ydgD are separated by 99 nucleotides ydgD and mdtI are separated by 38 nucleotides mdtI and mdtJ overlap by 14 nucleotides mdtJ and tqsA are separated by 411 nucleotides
NIAGMN_00355: ydgU - Uncharacterized protein YdgU, at 49,856 to 49,939
ydgU
NIAGMN_00360: ydgD - Uncharacterized serine protease YdgD, at 50,039 to 50,860
ydgD
NIAGMN_00365: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 50,899 to 51,228
mdtI
NIAGMN_00370: mdtJ - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 51,215 to 51,580
mdtJ
NIAGMN_00375: tqsA - AI-2 transporter TqsA, at 51,992 to 53,026
tqsA
Position (kb) 50
51
52 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 49.985 kb on + strand at 50.045 kb on - strand at 50.449 kb on - strand, within ydgD at 50.494 kb on + strand, within ydgD at 50.494 kb on + strand, within ydgD at 50.495 kb on - strand, within ydgD at 50.624 kb on + strand, within ydgD at 50.624 kb on + strand, within ydgD at 51.122 kb on - strand, within mdtI at 51.444 kb on - strand, within mdtJ at 51.561 kb on - strand at 51.576 kb on + strand at 51.661 kb on - strand at 51.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 49,985 + -0.1 50,045 - -1.9 50,449 - ydgD NIAGMN_00360 0.50 -2.2 50,494 + ydgD NIAGMN_00360 0.55 -0.1 50,494 + ydgD NIAGMN_00360 0.55 +0.4 50,495 - ydgD NIAGMN_00360 0.55 -1.6 50,624 + ydgD NIAGMN_00360 0.71 +0.1 50,624 + ydgD NIAGMN_00360 0.71 +0.6 51,122 - mdtI NIAGMN_00365 0.68 -3.7 51,444 - mdtJ NIAGMN_00370 0.63 -0.9 51,561 - +5.0 51,576 + +1.7 51,661 - -0.1 51,795 - -2.4
Or see this region's nucleotide sequence