Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfB and speG are separated by 34 nucleotides speG and ynfC are separated by 2 nucleotides ynfC and NIAGMN_00295 are separated by 71 nucleotides NIAGMN_00295 and ynfE are separated by 198 nucleotides
NIAGMN_00280: ynfB - DUF1283 domain-containing protein, at 33,888 to 34,229
ynfB
NIAGMN_00285: speG - spermidine N1-acetyltransferase, at 34,264 to 34,824
speG
NIAGMN_00290: ynfC - YnfC family lipoprotein, at 34,827 to 35,573
ynfC
NIAGMN_00295: NIAGMN_00295 - DUF1161 domain-containing protein, at 35,645 to 35,950
_00295
NIAGMN_00300: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 36,149 to 38,575
ynfE
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 33.851 kb on + strand at 33.888 kb on - strand at 34.322 kb on + strand, within speG at 34.323 kb on - strand, within speG at 34.416 kb on + strand, within speG at 34.503 kb on - strand, within speG at 35.380 kb on - strand, within ynfC at 35.951 kb on + strand at 35.952 kb on - strand at 36.020 kb on + strand at 36.021 kb on - strand at 36.352 kb on - strand at 36.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 33,851 + +1.0 33,888 - +1.0 34,322 + speG NIAGMN_00285 0.10 +0.7 34,323 - speG NIAGMN_00285 0.11 -3.1 34,416 + speG NIAGMN_00285 0.27 -0.3 34,503 - speG NIAGMN_00285 0.43 +3.7 35,380 - ynfC NIAGMN_00290 0.74 -0.3 35,951 + +3.1 35,952 - -1.9 36,020 + +0.9 36,021 - +0.7 36,352 - +1.2 36,364 + -0.5
Or see this region's nucleotide sequence