Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt queA and acpH are separated by 92 nucleotides acpH and MCAODC_27745 are separated by 20 nucleotides
MCAODC_27735: queA - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 2,290,772 to 2,291,842
queA
MCAODC_27740: acpH - ACP phosphodiesterase, at 2,291,935 to 2,292,516
acpH
MCAODC_27745: MCAODC_27745 - hypothetical protein, at 2,292,537 to 2,293,982
_27745
Position (kb)
2291
2292
2293 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2290.994 kb on - strand, within queA at 2290.994 kb on - strand, within queA at 2291.069 kb on + strand, within queA at 2291.070 kb on - strand, within queA at 2291.132 kb on + strand, within queA at 2291.335 kb on + strand, within queA at 2291.349 kb on + strand, within queA at 2291.388 kb on + strand, within queA at 2291.404 kb on + strand, within queA at 2291.405 kb on - strand, within queA at 2291.450 kb on - strand, within queA at 2291.500 kb on + strand, within queA at 2291.500 kb on + strand, within queA at 2291.630 kb on - strand, within queA at 2291.630 kb on - strand, within queA at 2291.665 kb on + strand, within queA at 2291.666 kb on - strand, within queA at 2291.666 kb on - strand, within queA at 2291.719 kb on + strand, within queA at 2291.770 kb on + strand at 2291.770 kb on + strand at 2291.770 kb on + strand at 2291.770 kb on + strand at 2291.771 kb on - strand at 2291.771 kb on - strand at 2291.771 kb on - strand at 2291.771 kb on - strand at 2291.864 kb on - strand at 2291.927 kb on + strand at 2291.928 kb on - strand at 2291.929 kb on + strand at 2291.930 kb on - strand at 2291.930 kb on - strand at 2292.063 kb on + strand, within acpH at 2292.064 kb on - strand, within acpH at 2292.064 kb on - strand, within acpH at 2292.064 kb on - strand, within acpH at 2292.064 kb on - strand, within acpH at 2292.064 kb on - strand, within acpH at 2292.064 kb on - strand, within acpH at 2292.075 kb on + strand, within acpH at 2292.159 kb on + strand, within acpH at 2292.160 kb on - strand, within acpH at 2292.310 kb on + strand, within acpH at 2292.310 kb on + strand, within acpH at 2292.314 kb on + strand, within acpH at 2292.315 kb on - strand, within acpH at 2292.315 kb on - strand, within acpH at 2292.315 kb on - strand, within acpH at 2292.372 kb on - strand, within acpH at 2292.652 kb on - strand at 2292.681 kb on + strand at 2292.682 kb on - strand, within MCAODC_27745 at 2292.682 kb on - strand, within MCAODC_27745 at 2292.682 kb on - strand, within MCAODC_27745 at 2292.684 kb on - strand, within MCAODC_27745 at 2292.684 kb on - strand, within MCAODC_27745 at 2292.718 kb on - strand, within MCAODC_27745 at 2292.718 kb on - strand, within MCAODC_27745 at 2292.718 kb on - strand, within MCAODC_27745 at 2292.752 kb on + strand, within MCAODC_27745 at 2292.752 kb on + strand, within MCAODC_27745 at 2292.752 kb on + strand, within MCAODC_27745 at 2292.753 kb on - strand, within MCAODC_27745 at 2292.753 kb on - strand, within MCAODC_27745 at 2292.753 kb on - strand, within MCAODC_27745 at 2292.753 kb on - strand, within MCAODC_27745 at 2292.834 kb on + strand, within MCAODC_27745 at 2292.847 kb on - strand, within MCAODC_27745 at 2292.919 kb on + strand, within MCAODC_27745 at 2292.919 kb on + strand, within MCAODC_27745 at 2292.919 kb on + strand, within MCAODC_27745 at 2292.920 kb on - strand, within MCAODC_27745 at 2292.920 kb on - strand, within MCAODC_27745 at 2292.932 kb on + strand, within MCAODC_27745 at 2293.061 kb on + strand, within MCAODC_27745 at 2293.229 kb on - strand, within MCAODC_27745 at 2293.254 kb on + strand, within MCAODC_27745 at 2293.284 kb on - strand, within MCAODC_27745 at 2293.317 kb on + strand, within MCAODC_27745 at 2293.344 kb on - strand, within MCAODC_27745 at 2293.513 kb on + strand, within MCAODC_27745
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,290,994 - queA MCAODC_27735 0.21 -0.6 2,290,994 - queA MCAODC_27735 0.21 +0.3 2,291,069 + queA MCAODC_27735 0.28 -2.1 2,291,070 - queA MCAODC_27735 0.28 -2.5 2,291,132 + queA MCAODC_27735 0.34 -1.6 2,291,335 + queA MCAODC_27735 0.53 +1.7 2,291,349 + queA MCAODC_27735 0.54 -2.8 2,291,388 + queA MCAODC_27735 0.58 -0.5 2,291,404 + queA MCAODC_27735 0.59 +2.7 2,291,405 - queA MCAODC_27735 0.59 -2.5 2,291,450 - queA MCAODC_27735 0.63 -0.9 2,291,500 + queA MCAODC_27735 0.68 -0.0 2,291,500 + queA MCAODC_27735 0.68 -1.3 2,291,630 - queA MCAODC_27735 0.80 -0.8 2,291,630 - queA MCAODC_27735 0.80 +0.8 2,291,665 + queA MCAODC_27735 0.83 -3.2 2,291,666 - queA MCAODC_27735 0.83 +1.3 2,291,666 - queA MCAODC_27735 0.83 +0.0 2,291,719 + queA MCAODC_27735 0.88 -0.5 2,291,770 + -0.1 2,291,770 + +0.4 2,291,770 + +1.2 2,291,770 + +2.7 2,291,771 - -0.2 2,291,771 - +0.2 2,291,771 - -3.2 2,291,771 - -2.6 2,291,864 - -1.4 2,291,927 + -0.7 2,291,928 - +1.3 2,291,929 + -0.5 2,291,930 - -2.8 2,291,930 - +0.4 2,292,063 + acpH MCAODC_27740 0.22 -1.6 2,292,064 - acpH MCAODC_27740 0.22 +0.4 2,292,064 - acpH MCAODC_27740 0.22 -1.1 2,292,064 - acpH MCAODC_27740 0.22 -0.2 2,292,064 - acpH MCAODC_27740 0.22 +1.1 2,292,064 - acpH MCAODC_27740 0.22 -1.0 2,292,064 - acpH MCAODC_27740 0.22 +0.3 2,292,075 + acpH MCAODC_27740 0.24 -1.1 2,292,159 + acpH MCAODC_27740 0.38 +1.2 2,292,160 - acpH MCAODC_27740 0.39 +1.7 2,292,310 + acpH MCAODC_27740 0.64 +1.3 2,292,310 + acpH MCAODC_27740 0.64 -0.1 2,292,314 + acpH MCAODC_27740 0.65 +0.8 2,292,315 - acpH MCAODC_27740 0.65 +0.0 2,292,315 - acpH MCAODC_27740 0.65 +0.7 2,292,315 - acpH MCAODC_27740 0.65 +1.6 2,292,372 - acpH MCAODC_27740 0.75 +0.6 2,292,652 - -0.0 2,292,681 + -0.3 2,292,682 - MCAODC_27745 0.10 +2.0 2,292,682 - MCAODC_27745 0.10 -0.1 2,292,682 - MCAODC_27745 0.10 -1.6 2,292,684 - MCAODC_27745 0.10 +0.6 2,292,684 - MCAODC_27745 0.10 +0.4 2,292,718 - MCAODC_27745 0.13 -2.0 2,292,718 - MCAODC_27745 0.13 -0.3 2,292,718 - MCAODC_27745 0.13 +0.4 2,292,752 + MCAODC_27745 0.15 +0.3 2,292,752 + MCAODC_27745 0.15 +1.6 2,292,752 + MCAODC_27745 0.15 +0.5 2,292,753 - MCAODC_27745 0.15 -3.3 2,292,753 - MCAODC_27745 0.15 -0.2 2,292,753 - MCAODC_27745 0.15 +0.8 2,292,753 - MCAODC_27745 0.15 +3.1 2,292,834 + MCAODC_27745 0.21 -1.1 2,292,847 - MCAODC_27745 0.21 -0.4 2,292,919 + MCAODC_27745 0.26 -2.7 2,292,919 + MCAODC_27745 0.26 -0.5 2,292,919 + MCAODC_27745 0.26 -0.1 2,292,920 - MCAODC_27745 0.26 +0.5 2,292,920 - MCAODC_27745 0.26 +1.0 2,292,932 + MCAODC_27745 0.27 -0.4 2,293,061 + MCAODC_27745 0.36 -0.0 2,293,229 - MCAODC_27745 0.48 +2.0 2,293,254 + MCAODC_27745 0.50 -1.5 2,293,284 - MCAODC_27745 0.52 -0.2 2,293,317 + MCAODC_27745 0.54 +1.1 2,293,344 - MCAODC_27745 0.56 -0.1 2,293,513 + MCAODC_27745 0.67 -0.7
Or see this region's nucleotide sequence