Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_26260 and rhsA overlap by 4 nucleotides
MCAODC_26260: MCAODC_26260 - Uncharacterized protein YbfC, at 1,968,021 to 1,968,590
_26260
MCAODC_26265: rhsA - RHS element protein, at 1,968,587 to 1,972,786
rhsA
Position (kb)
1968
1969 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1967.046 kb on + strand at 1967.136 kb on + strand at 1967.216 kb on + strand at 1967.267 kb on + strand at 1967.341 kb on - strand at 1967.344 kb on - strand at 1967.717 kb on - strand at 1967.731 kb on + strand at 1967.857 kb on + strand at 1967.858 kb on - strand at 1967.858 kb on - strand at 1967.908 kb on - strand at 1967.908 kb on - strand at 1968.270 kb on + strand, within MCAODC_26260 at 1968.453 kb on + strand, within MCAODC_26260 at 1968.716 kb on - strand at 1968.716 kb on - strand at 1968.718 kb on - strand at 1968.763 kb on - strand at 1968.782 kb on - strand at 1968.852 kb on + strand at 1968.853 kb on - strand at 1968.934 kb on - strand at 1968.944 kb on + strand at 1968.944 kb on + strand at 1968.945 kb on - strand at 1968.956 kb on + strand at 1969.025 kb on + strand, within rhsA at 1969.026 kb on - strand, within rhsA at 1969.061 kb on + strand, within rhsA at 1969.062 kb on - strand, within rhsA at 1969.062 kb on - strand, within rhsA at 1969.063 kb on + strand, within rhsA at 1969.064 kb on - strand, within rhsA at 1969.064 kb on - strand, within rhsA at 1969.065 kb on + strand, within rhsA at 1969.066 kb on - strand, within rhsA at 1969.066 kb on - strand, within rhsA at 1969.066 kb on - strand, within rhsA at 1969.066 kb on - strand, within rhsA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,967,046 + +0.0 1,967,136 + +0.4 1,967,216 + +0.9 1,967,267 + -0.9 1,967,341 - +1.0 1,967,344 - -0.1 1,967,717 - +1.3 1,967,731 + -0.6 1,967,857 + -1.3 1,967,858 - +1.5 1,967,858 - +4.2 1,967,908 - +1.2 1,967,908 - +0.5 1,968,270 + MCAODC_26260 0.44 +3.1 1,968,453 + MCAODC_26260 0.76 +0.2 1,968,716 - -2.9 1,968,716 - -0.0 1,968,718 - +0.3 1,968,763 - -0.3 1,968,782 - +2.7 1,968,852 + -0.6 1,968,853 - +0.6 1,968,934 - -0.4 1,968,944 + -2.3 1,968,944 + -1.8 1,968,945 - +1.0 1,968,956 + -0.8 1,969,025 + rhsA MCAODC_26265 0.10 -0.1 1,969,026 - rhsA MCAODC_26265 0.10 +0.9 1,969,061 + rhsA MCAODC_26265 0.11 -1.4 1,969,062 - rhsA MCAODC_26265 0.11 +0.6 1,969,062 - rhsA MCAODC_26265 0.11 +2.1 1,969,063 + rhsA MCAODC_26265 0.11 -0.1 1,969,064 - rhsA MCAODC_26265 0.11 +0.0 1,969,064 - rhsA MCAODC_26265 0.11 +1.9 1,969,065 + rhsA MCAODC_26265 0.11 +0.5 1,969,066 - rhsA MCAODC_26265 0.11 +0.4 1,969,066 - rhsA MCAODC_26265 0.11 -0.1 1,969,066 - rhsA MCAODC_26265 0.11 -1.6 1,969,066 - rhsA MCAODC_26265 0.11 -0.4
Or see this region's nucleotide sequence