Strain Fitness in Escherichia coli ECRC101 around MCAODC_24600

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,623,726	+	yccT	MCAODC_24590	0.39	-0.9
1,623,726	+	yccT	MCAODC_24590	0.39	+0.4
1,623,729	+	yccT	MCAODC_24590	0.39	-1.3
1,623,899	-	yccT	MCAODC_24590	0.65	-1.0
1,623,920	-	yccT	MCAODC_24590	0.68	+2.3
1,623,922	-	yccT	MCAODC_24590	0.68	-0.6
1,624,057	+	yccT	MCAODC_24590	0.89	-0.5
1,624,057	+	yccT	MCAODC_24590	0.89	+0.9
1,624,058	-	yccT	MCAODC_24590	0.89	-0.1
1,624,058	-	yccT	MCAODC_24590	0.89	-0.7
1,624,058	-	yccT	MCAODC_24590	0.89	-0.6
1,624,167	+				-2.2
1,624,180	+				-0.5
1,624,180	+				-0.4
1,624,180	+				-1.8
1,624,181	-				+2.3
1,624,193	+				-1.0
1,624,193	+				+2.5
1,624,213	+				+0.1
1,624,213	+				-0.3
1,624,221	+				-1.5
1,624,222	-				-2.5
1,624,222	-				-3.3
1,624,348	+	mgsA	MCAODC_24595	0.26	-2.4
1,624,348	+	mgsA	MCAODC_24595	0.26	+0.9
1,624,348	+	mgsA	MCAODC_24595	0.26	-0.0
1,624,348	+	mgsA	MCAODC_24595	0.26	-2.0
1,624,349	-	mgsA	MCAODC_24595	0.27	+2.6
1,624,349	-	mgsA	MCAODC_24595	0.27	-0.8
1,624,349	-	mgsA	MCAODC_24595	0.27	+0.1
1,624,349	-	mgsA	MCAODC_24595	0.27	+0.1
1,624,349	-	mgsA	MCAODC_24595	0.27	+0.0
1,624,349	-	mgsA	MCAODC_24595	0.27	-0.9
1,624,353	+	mgsA	MCAODC_24595	0.27	-3.0
1,624,353	+	mgsA	MCAODC_24595	0.27	-1.5
1,624,353	+	mgsA	MCAODC_24595	0.27	-2.2
1,624,353	+	mgsA	MCAODC_24595	0.27	-1.6
1,624,480	+	mgsA	MCAODC_24595	0.55	+0.8
1,624,504	+	mgsA	MCAODC_24595	0.60	-2.6
1,624,683	+				+0.5
1,624,962	-	helD	MCAODC_24600	0.12	-1.5
1,624,962	-	helD	MCAODC_24600	0.12	+0.8
1,624,998	+	helD	MCAODC_24600	0.14	+0.3
1,625,066	+	helD	MCAODC_24600	0.17	-4.6
1,625,259	+	helD	MCAODC_24600	0.26	-1.9
1,625,449	-	helD	MCAODC_24600	0.36	-1.6
1,625,473	-	helD	MCAODC_24600	0.37	-1.2
1,625,473	-	helD	MCAODC_24600	0.37	+1.1
1,625,473	-	helD	MCAODC_24600	0.37	+0.1
1,625,608	-	helD	MCAODC_24600	0.43	+1.4
1,625,693	-	helD	MCAODC_24600	0.47	-1.4
1,625,850	+	helD	MCAODC_24600	0.55	-0.2
1,625,874	+	helD	MCAODC_24600	0.56	-0.6
1,625,992	-	helD	MCAODC_24600	0.62	-2.7
1,626,243	-	helD	MCAODC_24600	0.74	-1.9
1,626,253	-	helD	MCAODC_24600	0.75	-2.2
1,626,421	-	helD	MCAODC_24600	0.83	-1.2
1,626,779	+				-0.0
1,626,779	+				-0.1
1,626,811	-				+0.6
1,626,893	+				+0.4
1,626,978	-	yccF	MCAODC_24605	0.19	-0.1
1,626,992	+	yccF	MCAODC_24605	0.22	+0.5
1,627,047	+	yccF	MCAODC_24605	0.34	-2.5
1,627,048	-	yccF	MCAODC_24605	0.34	-0.2
1,627,048	-	yccF	MCAODC_24605	0.34	-3.1
1,627,061	+	yccF	MCAODC_24605	0.37	-1.3
1,627,061	+	yccF	MCAODC_24605	0.37	+1.7
1,627,061	+	yccF	MCAODC_24605	0.37	+3.3
1,627,061	+	yccF	MCAODC_24605	0.37	-0.0
1,627,061	+	yccF	MCAODC_24605	0.37	-2.5
1,627,062	-	yccF	MCAODC_24605	0.38	-0.5
1,627,199	+	yccF	MCAODC_24605	0.68	+0.4
1,627,239	-	yccF	MCAODC_24605	0.77	-2.5
1,627,258	+	yccF	MCAODC_24605	0.81	+0.2
1,627,259	-	yccF	MCAODC_24605	0.82	+0.5
1,627,288	+	yccF	MCAODC_24605	0.88	-0.8
1,627,359	-				-0.4
1,627,359	-				-0.2
1,627,359	-				-1.4
1,627,359	-				+0.2
1,627,363	+				-0.1
1,627,364	-				+0.4
1,627,383	+				+1.1
1,627,384	-				+1.5
1,627,408	-				-1.8
1,627,472	-				+1.9
1,627,600	+	yccS	MCAODC_24610	0.12	-2.5
1,627,642	+	yccS	MCAODC_24610	0.13	+0.5
1,627,692	+	yccS	MCAODC_24610	0.16	+2.7
1,627,693	-	yccS	MCAODC_24610	0.16	+0.2
1,627,731	+	yccS	MCAODC_24610	0.18	+0.5
1,627,731	+	yccS	MCAODC_24610	0.18	+0.1
1,627,731	+	yccS	MCAODC_24610	0.18	+1.1
1,627,732	-	yccS	MCAODC_24610	0.18	-3.2
1,627,736	+	yccS	MCAODC_24610	0.18	-2.2
1,627,736	+	yccS	MCAODC_24610	0.18	+0.0
1,627,736	+	yccS	MCAODC_24610	0.18	-0.0
1,627,737	-	yccS	MCAODC_24610	0.18	-2.8
1,627,755	+	yccS	MCAODC_24610	0.19	-1.0
1,627,755	+	yccS	MCAODC_24610	0.19	+0.8
1,627,756	-	yccS	MCAODC_24610	0.19	+0.8
1,627,756	-	yccS	MCAODC_24610	0.19	+0.0
1,627,756	-	yccS	MCAODC_24610	0.19	-0.4