Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgA and flgM are separated by 75 nucleotides flgM and flgN are separated by 4 nucleotides flgN and murJ are separated by 39 nucleotides murJ and yceM are separated by 109 nucleotides
MCAODC_23040: flgA - flagellar basal body P-ring formation protein FlgA, at 1,350,472 to 1,351,131
flgA
MCAODC_23045: flgM - anti-sigma-28 factor FlgM, at 1,351,207 to 1,351,500
flgM
MCAODC_23050: flgN - flagella biosynthesis chaperone FlgN, at 1,351,505 to 1,351,921
flgN
MCAODC_23055: murJ - murein biosynthesis integral membrane protein MurJ, at 1,351,961 to 1,353,496
murJ
MCAODC_23060: yceM - Putative oxidoreductase YceM, at 1,353,606 to 1,354,529
yceM
Position (kb) 1351
1352
1353
1354 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1351.082 kb on + strand at 1351.083 kb on - strand at 1351.120 kb on - strand at 1351.122 kb on - strand at 1351.165 kb on + strand at 1351.165 kb on + strand at 1351.179 kb on + strand at 1351.202 kb on - strand at 1351.212 kb on + strand at 1351.212 kb on + strand at 1351.241 kb on + strand, within flgM at 1351.494 kb on + strand at 1351.498 kb on + strand at 1351.504 kb on + strand at 1351.504 kb on + strand at 1351.594 kb on + strand, within flgN at 1351.761 kb on + strand, within flgN at 1351.780 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.860 kb on + strand, within flgN at 1351.862 kb on + strand, within flgN at 1351.962 kb on + strand at 1351.963 kb on - strand at 1353.085 kb on + strand, within murJ at 1353.559 kb on - strand at 1353.564 kb on - strand at 1353.645 kb on - strand at 1353.784 kb on - strand, within yceM at 1353.784 kb on - strand, within yceM at 1353.893 kb on + strand, within yceM at 1353.894 kb on - strand, within yceM at 1353.894 kb on - strand, within yceM at 1353.894 kb on - strand, within yceM at 1353.894 kb on - strand, within yceM at 1353.894 kb on - strand, within yceM at 1354.036 kb on + strand, within yceM at 1354.037 kb on - strand, within yceM at 1354.037 kb on - strand, within yceM at 1354.086 kb on - strand, within yceM at 1354.086 kb on - strand, within yceM at 1354.266 kb on + strand, within yceM at 1354.267 kb on - strand, within yceM at 1354.267 kb on - strand, within yceM at 1354.281 kb on + strand, within yceM at 1354.282 kb on - strand, within yceM at 1354.287 kb on - strand, within yceM at 1354.287 kb on - strand, within yceM at 1354.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,351,082 + +0.5 1,351,083 - -1.8 1,351,120 - -1.1 1,351,122 - -1.5 1,351,165 + +1.1 1,351,165 + +0.2 1,351,179 + +0.1 1,351,202 - -1.6 1,351,212 + -1.0 1,351,212 + +0.7 1,351,241 + flgM MCAODC_23045 0.12 +0.3 1,351,494 + -3.9 1,351,498 + +1.9 1,351,504 + -0.2 1,351,504 + -1.8 1,351,594 + flgN MCAODC_23050 0.21 -2.8 1,351,761 + flgN MCAODC_23050 0.61 -0.4 1,351,780 + flgN MCAODC_23050 0.66 +1.3 1,351,860 + flgN MCAODC_23050 0.85 -0.4 1,351,860 + flgN MCAODC_23050 0.85 +0.4 1,351,860 + flgN MCAODC_23050 0.85 +0.9 1,351,860 + flgN MCAODC_23050 0.85 -2.0 1,351,860 + flgN MCAODC_23050 0.85 +0.2 1,351,860 + flgN MCAODC_23050 0.85 +0.7 1,351,860 + flgN MCAODC_23050 0.85 +1.4 1,351,862 + flgN MCAODC_23050 0.86 -0.2 1,351,962 + -0.0 1,351,963 - +0.2 1,353,085 + murJ MCAODC_23055 0.73 -1.1 1,353,559 - -0.1 1,353,564 - +0.0 1,353,645 - -3.2 1,353,784 - yceM MCAODC_23060 0.19 +0.1 1,353,784 - yceM MCAODC_23060 0.19 -2.5 1,353,893 + yceM MCAODC_23060 0.31 +0.2 1,353,894 - yceM MCAODC_23060 0.31 -0.9 1,353,894 - yceM MCAODC_23060 0.31 -0.1 1,353,894 - yceM MCAODC_23060 0.31 -1.6 1,353,894 - yceM MCAODC_23060 0.31 -0.2 1,353,894 - yceM MCAODC_23060 0.31 +0.8 1,354,036 + yceM MCAODC_23060 0.47 +1.3 1,354,037 - yceM MCAODC_23060 0.47 +0.9 1,354,037 - yceM MCAODC_23060 0.47 +0.5 1,354,086 - yceM MCAODC_23060 0.52 +0.9 1,354,086 - yceM MCAODC_23060 0.52 +1.1 1,354,266 + yceM MCAODC_23060 0.71 -2.5 1,354,267 - yceM MCAODC_23060 0.72 +0.2 1,354,267 - yceM MCAODC_23060 0.72 -3.4 1,354,281 + yceM MCAODC_23060 0.73 +0.8 1,354,282 - yceM MCAODC_23060 0.73 +0.2 1,354,287 - yceM MCAODC_23060 0.74 +0.0 1,354,287 - yceM MCAODC_23060 0.74 -0.3 1,354,437 + +1.5
Or see this region's nucleotide sequence