Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_21535 and MCAODC_21540 overlap by 23 nucleotides MCAODC_21540 and dicB are separated by 558 nucleotides dicB and MCAODC_21550 overlap by 4 nucleotides MCAODC_21550 and dnaQ are separated by 92 nucleotides
MCAODC_21535: MCAODC_21535 - hypothetical protein, at 1,092,767 to 1,093,174
_21535
MCAODC_21540: MCAODC_21540 - hypothetical protein, at 1,093,152 to 1,093,385
_21540
MCAODC_21545: dicB - Division inhibition protein DicB, at 1,093,944 to 1,094,132
dicB
MCAODC_21550: MCAODC_21550 - DUF1482 domain-containing protein, at 1,094,129 to 1,094,320
_21550
MCAODC_21555: dnaQ - exonuclease, at 1,094,413 to 1,096,884
dnaQ
Position (kb) 1093
1094
1095 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1093.132 kb on + strand, within MCAODC_21535 at 1093.335 kb on + strand, within MCAODC_21540 at 1093.489 kb on + strand at 1093.547 kb on - strand at 1093.547 kb on - strand at 1093.622 kb on + strand at 1093.861 kb on - strand at 1094.649 kb on + strand at 1094.751 kb on - strand, within dnaQ
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,093,132 + MCAODC_21535 0.89 -0.3 1,093,335 + MCAODC_21540 0.78 +0.4 1,093,489 + +1.3 1,093,547 - +1.4 1,093,547 - +1.6 1,093,622 + -1.0 1,093,861 - +0.9 1,094,649 + -3.4 1,094,751 - dnaQ MCAODC_21555 0.14 -1.5
Or see this region's nucleotide sequence