Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegD and yegI are separated by 12 nucleotides yegI and pphC overlap by 4 nucleotides pphC and terY are separated by 77 nucleotides
MCAODC_20690: yegD - molecular chaperone, at 951,452 to 952,756
yegD
MCAODC_20695: yegI - protein kinase YegI, at 952,769 to 954,709
yegI
MCAODC_20700: pphC - Serine/threonine-protein phosphatase 3, at 954,706 to 955,386
pphC
MCAODC_20705: terY - Uncharacterized protein YegL, at 955,464 to 956,123
terY
Position (kb) 952
953
954
955 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 951.771 kb on + strand, within yegD at 951.772 kb on - strand, within yegD at 951.851 kb on - strand, within yegD at 951.851 kb on - strand, within yegD at 951.969 kb on + strand, within yegD at 951.970 kb on - strand, within yegD at 951.970 kb on - strand, within yegD at 952.018 kb on - strand, within yegD at 952.060 kb on + strand, within yegD at 952.060 kb on + strand, within yegD at 952.284 kb on + strand, within yegD at 952.284 kb on + strand, within yegD at 952.304 kb on + strand, within yegD at 952.305 kb on - strand, within yegD at 952.309 kb on + strand, within yegD at 952.310 kb on - strand, within yegD at 952.342 kb on - strand, within yegD at 952.609 kb on + strand, within yegD at 952.614 kb on - strand, within yegD at 952.648 kb on + strand at 952.824 kb on - strand at 953.350 kb on - strand, within yegI at 953.350 kb on - strand, within yegI at 953.350 kb on - strand, within yegI at 953.369 kb on - strand, within yegI at 953.402 kb on - strand, within yegI at 953.461 kb on + strand, within yegI at 953.461 kb on + strand, within yegI at 953.466 kb on + strand, within yegI at 953.538 kb on + strand, within yegI at 953.539 kb on - strand, within yegI at 953.549 kb on + strand, within yegI at 953.709 kb on + strand, within yegI at 953.766 kb on + strand, within yegI at 953.811 kb on - strand, within yegI at 953.814 kb on - strand, within yegI at 953.948 kb on + strand, within yegI at 953.999 kb on - strand, within yegI at 954.192 kb on - strand, within yegI at 954.263 kb on + strand, within yegI at 954.264 kb on - strand, within yegI at 954.268 kb on + strand, within yegI at 954.284 kb on + strand, within yegI at 954.284 kb on + strand, within yegI at 954.319 kb on + strand, within yegI at 954.338 kb on - strand, within yegI at 954.351 kb on + strand, within yegI at 954.352 kb on - strand, within yegI at 954.352 kb on - strand, within yegI at 954.352 kb on - strand, within yegI at 954.357 kb on - strand, within yegI at 954.408 kb on + strand, within yegI at 954.408 kb on + strand, within yegI at 954.408 kb on + strand, within yegI at 954.409 kb on - strand, within yegI at 954.409 kb on - strand, within yegI at 954.409 kb on - strand, within yegI at 954.409 kb on - strand, within yegI at 954.415 kb on + strand, within yegI at 954.415 kb on + strand, within yegI at 954.416 kb on - strand, within yegI at 954.416 kb on - strand, within yegI at 954.416 kb on - strand, within yegI at 954.511 kb on - strand, within yegI at 954.544 kb on + strand at 954.544 kb on + strand at 954.628 kb on - strand at 954.691 kb on + strand at 954.691 kb on + strand at 954.691 kb on + strand at 954.692 kb on - strand at 954.692 kb on - strand at 954.692 kb on - strand at 954.693 kb on + strand at 954.693 kb on + strand at 954.693 kb on + strand at 954.694 kb on - strand at 954.694 kb on - strand at 954.695 kb on + strand at 954.696 kb on - strand at 954.696 kb on - strand at 954.712 kb on + strand at 954.738 kb on + strand at 954.739 kb on - strand at 955.010 kb on + strand, within pphC at 955.011 kb on - strand, within pphC at 955.030 kb on - strand, within pphC at 955.037 kb on - strand, within pphC at 955.037 kb on - strand, within pphC at 955.153 kb on + strand, within pphC at 955.206 kb on + strand, within pphC at 955.265 kb on + strand, within pphC at 955.266 kb on - strand, within pphC at 955.266 kb on - strand, within pphC at 955.266 kb on - strand, within pphC at 955.408 kb on + strand at 955.408 kb on + strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.449 kb on - strand at 955.576 kb on - strand, within terY at 955.625 kb on + strand, within terY at 955.671 kb on - strand, within terY at 955.671 kb on - strand, within terY
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 951,771 + yegD MCAODC_20690 0.24 -0.6 951,772 - yegD MCAODC_20690 0.25 +2.1 951,851 - yegD MCAODC_20690 0.31 +1.2 951,851 - yegD MCAODC_20690 0.31 +0.5 951,969 + yegD MCAODC_20690 0.40 +0.5 951,970 - yegD MCAODC_20690 0.40 +1.0 951,970 - yegD MCAODC_20690 0.40 -2.8 952,018 - yegD MCAODC_20690 0.43 +0.2 952,060 + yegD MCAODC_20690 0.47 +0.5 952,060 + yegD MCAODC_20690 0.47 +0.5 952,284 + yegD MCAODC_20690 0.64 -1.2 952,284 + yegD MCAODC_20690 0.64 +0.5 952,304 + yegD MCAODC_20690 0.65 +1.0 952,305 - yegD MCAODC_20690 0.65 +1.0 952,309 + yegD MCAODC_20690 0.66 +1.4 952,310 - yegD MCAODC_20690 0.66 +0.4 952,342 - yegD MCAODC_20690 0.68 +2.1 952,609 + yegD MCAODC_20690 0.89 -1.9 952,614 - yegD MCAODC_20690 0.89 -1.1 952,648 + -0.5 952,824 - +1.8 953,350 - yegI MCAODC_20695 0.30 +1.5 953,350 - yegI MCAODC_20695 0.30 +0.2 953,350 - yegI MCAODC_20695 0.30 +1.6 953,369 - yegI MCAODC_20695 0.31 -0.7 953,402 - yegI MCAODC_20695 0.33 -1.4 953,461 + yegI MCAODC_20695 0.36 +0.1 953,461 + yegI MCAODC_20695 0.36 -0.1 953,466 + yegI MCAODC_20695 0.36 +1.0 953,538 + yegI MCAODC_20695 0.40 +1.0 953,539 - yegI MCAODC_20695 0.40 +0.8 953,549 + yegI MCAODC_20695 0.40 -0.7 953,709 + yegI MCAODC_20695 0.48 -3.3 953,766 + yegI MCAODC_20695 0.51 +0.6 953,811 - yegI MCAODC_20695 0.54 +1.6 953,814 - yegI MCAODC_20695 0.54 -1.2 953,948 + yegI MCAODC_20695 0.61 +2.7 953,999 - yegI MCAODC_20695 0.63 +0.9 954,192 - yegI MCAODC_20695 0.73 +0.2 954,263 + yegI MCAODC_20695 0.77 +0.1 954,264 - yegI MCAODC_20695 0.77 -0.2 954,268 + yegI MCAODC_20695 0.77 +1.1 954,284 + yegI MCAODC_20695 0.78 +0.7 954,284 + yegI MCAODC_20695 0.78 -0.0 954,319 + yegI MCAODC_20695 0.80 +1.3 954,338 - yegI MCAODC_20695 0.81 -2.1 954,351 + yegI MCAODC_20695 0.82 +1.6 954,352 - yegI MCAODC_20695 0.82 +1.4 954,352 - yegI MCAODC_20695 0.82 -2.7 954,352 - yegI MCAODC_20695 0.82 -0.7 954,357 - yegI MCAODC_20695 0.82 +0.1 954,408 + yegI MCAODC_20695 0.84 -0.6 954,408 + yegI MCAODC_20695 0.84 -2.9 954,408 + yegI MCAODC_20695 0.84 +0.1 954,409 - yegI MCAODC_20695 0.84 -0.4 954,409 - yegI MCAODC_20695 0.84 +0.7 954,409 - yegI MCAODC_20695 0.84 +1.8 954,409 - yegI MCAODC_20695 0.84 -1.4 954,415 + yegI MCAODC_20695 0.85 -0.1 954,415 + yegI MCAODC_20695 0.85 +0.7 954,416 - yegI MCAODC_20695 0.85 +1.7 954,416 - yegI MCAODC_20695 0.85 +0.1 954,416 - yegI MCAODC_20695 0.85 +0.2 954,511 - yegI MCAODC_20695 0.90 +0.6 954,544 + +2.2 954,544 + +0.7 954,628 - -0.9 954,691 + +3.3 954,691 + -1.1 954,691 + +1.1 954,692 - -1.1 954,692 - +0.9 954,692 - -0.4 954,693 + -0.1 954,693 + +0.9 954,693 + +0.6 954,694 - -2.8 954,694 - +0.4 954,695 + +0.5 954,696 - -1.6 954,696 - +0.2 954,712 + -3.5 954,738 + -0.4 954,739 - -2.3 955,010 + pphC MCAODC_20700 0.45 +0.5 955,011 - pphC MCAODC_20700 0.45 +0.6 955,030 - pphC MCAODC_20700 0.48 -0.1 955,037 - pphC MCAODC_20700 0.49 -1.4 955,037 - pphC MCAODC_20700 0.49 -3.3 955,153 + pphC MCAODC_20700 0.66 -1.3 955,206 + pphC MCAODC_20700 0.73 -3.5 955,265 + pphC MCAODC_20700 0.82 +0.7 955,266 - pphC MCAODC_20700 0.82 +1.0 955,266 - pphC MCAODC_20700 0.82 -1.7 955,266 - pphC MCAODC_20700 0.82 -0.1 955,408 + +0.2 955,408 + -0.5 955,409 - +0.1 955,409 - +2.7 955,409 - +0.1 955,449 - -4.4 955,576 - terY MCAODC_20705 0.17 +0.4 955,625 + terY MCAODC_20705 0.24 -0.5 955,671 - terY MCAODC_20705 0.31 -0.1 955,671 - terY MCAODC_20705 0.31 -1.1
Or see this region's nucleotide sequence