Strain Fitness in Escherichia coli ECRC101 around MCAODC_20300

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_20295 and MCAODC_20300 overlap by 4 nucleotidesMCAODC_20300 and MCAODC_20305 overlap by 4 nucleotides MCAODC_20295: MCAODC_20295 - dGTPase, at 871,160 to 871,843 _20295 MCAODC_20300: MCAODC_20300 - chemotaxis protein, at 871,840 to 872,745 _20300 MCAODC_20305: MCAODC_20305 - phospholipase, at 872,742 to 873,812 _20305 Position (kb) 871 872 873Strain fitness (log2 ratio) -1 0 1at 870.877 kb on + strandat 870.900 kb on + strandat 870.941 kb on - strandat 870.943 kb on + strandat 870.949 kb on + strandat 870.959 kb on - strandat 870.991 kb on - strandat 871.568 kb on - strand, within MCAODC_20295at 871.568 kb on - strand, within MCAODC_20295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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870,877 + -1.7
870,900 + +0.0
870,941 - -0.3
870,943 + -0.3
870,949 + +1.6
870,959 - -0.7
870,991 - +1.0
871,568 - MCAODC_20295 0.60 -0.7
871,568 - MCAODC_20295 0.60 +0.2

Or see this region's nucleotide sequence