Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepA and MCAODC_20290 overlap by 13 nucleotides MCAODC_20290 and MCAODC_20295 are separated by 336 nucleotides MCAODC_20295 and MCAODC_20300 overlap by 4 nucleotides MCAODC_20300 and MCAODC_20305 overlap by 4 nucleotides
MCAODC_20285: fepA - TonB-dependent receptor, at 868,560 to 870,707
fepA
MCAODC_20290: MCAODC_20290 - hypothetical protein, at 870,695 to 870,823
_20290
MCAODC_20295: MCAODC_20295 - dGTPase, at 871,160 to 871,843
_20295
MCAODC_20300: MCAODC_20300 - chemotaxis protein, at 871,840 to 872,745
_20300
MCAODC_20305: MCAODC_20305 - phospholipase, at 872,742 to 873,812
_20305
Position (kb) 871
872 Strain fitness (log2 ratio) -2
-1
0
1
2 at 870.168 kb on + strand, within fepA at 870.187 kb on - strand, within fepA at 870.189 kb on - strand, within fepA at 870.261 kb on + strand, within fepA at 870.340 kb on - strand, within fepA at 870.426 kb on - strand, within fepA at 870.440 kb on + strand, within fepA at 870.656 kb on + strand at 870.686 kb on - strand at 870.775 kb on + strand, within MCAODC_20290 at 870.775 kb on + strand, within MCAODC_20290 at 870.877 kb on + strand at 870.900 kb on + strand at 870.941 kb on - strand at 870.943 kb on + strand at 870.949 kb on + strand at 870.959 kb on - strand at 870.991 kb on - strand at 871.568 kb on - strand, within MCAODC_20295 at 871.568 kb on - strand, within MCAODC_20295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 870,168 + fepA MCAODC_20285 0.75 -0.7 870,187 - fepA MCAODC_20285 0.76 -0.3 870,189 - fepA MCAODC_20285 0.76 -1.3 870,261 + fepA MCAODC_20285 0.79 +1.7 870,340 - fepA MCAODC_20285 0.83 +0.3 870,426 - fepA MCAODC_20285 0.87 +2.1 870,440 + fepA MCAODC_20285 0.88 -1.9 870,656 + +0.4 870,686 - +0.2 870,775 + MCAODC_20290 0.62 -0.5 870,775 + MCAODC_20290 0.62 +1.7 870,877 + -1.7 870,900 + +0.0 870,941 - -0.3 870,943 + -0.3 870,949 + +1.6 870,959 - -0.7 870,991 - +1.0 871,568 - MCAODC_20295 0.60 -0.7 871,568 - MCAODC_20295 0.60 +0.2
Or see this region's nucleotide sequence