Strain Fitness in Escherichia coli ECRC101 around MCAODC_18645

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjG and rbsK are separated by 9 nucleotidesrbsK and ydjI are separated by 4 nucleotidesydjI and ydjJ are separated by 20 nucleotides MCAODC_18640: ydjG - NADH-dependent methylglyoxal reductase, at 585,876 to 586,856 ydjG MCAODC_18645: rbsK - sugar kinase, at 586,866 to 587,798 rbsK MCAODC_18650: ydjI - Uncharacterized protein YdjI, at 587,803 to 588,639 ydjI MCAODC_18655: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 588,660 to 589,703 ydjJ Position (kb) 586 587 588Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 585.873 kb on + strandat 585.878 kb on - strandat 586.021 kb on - strand, within ydjGat 586.091 kb on + strand, within ydjGat 586.299 kb on - strand, within ydjGat 586.350 kb on - strand, within ydjGat 586.387 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.460 kb on - strand, within ydjGat 586.541 kb on - strand, within ydjGat 586.615 kb on - strand, within ydjGat 586.615 kb on - strand, within ydjGat 586.658 kb on + strand, within ydjGat 586.668 kb on - strand, within ydjGat 586.679 kb on + strand, within ydjGat 586.680 kb on - strand, within ydjGat 586.680 kb on - strand, within ydjGat 586.682 kb on - strand, within ydjGat 586.695 kb on - strand, within ydjGat 586.743 kb on - strand, within ydjGat 586.743 kb on - strand, within ydjGat 586.746 kb on + strand, within ydjGat 586.746 kb on + strand, within ydjGat 586.938 kb on + strandat 586.939 kb on - strandat 586.950 kb on - strandat 587.001 kb on + strand, within rbsKat 587.002 kb on - strand, within rbsKat 587.002 kb on - strand, within rbsKat 587.234 kb on - strand, within rbsKat 587.252 kb on + strand, within rbsKat 587.252 kb on + strand, within rbsKat 587.289 kb on - strand, within rbsKat 587.376 kb on - strand, within rbsKat 587.516 kb on + strand, within rbsKat 587.517 kb on - strand, within rbsKat 587.628 kb on - strand, within rbsKat 587.649 kb on - strand, within rbsKat 588.147 kb on + strand, within ydjIat 588.186 kb on - strand, within ydjIat 588.749 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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585,873 + -1.1
585,878 - -1.8
586,021 - ydjG MCAODC_18640 0.15 -0.8
586,091 + ydjG MCAODC_18640 0.22 -1.4
586,299 - ydjG MCAODC_18640 0.43 +0.2
586,350 - ydjG MCAODC_18640 0.48 -1.9
586,387 - ydjG MCAODC_18640 0.52 +0.6
586,460 - ydjG MCAODC_18640 0.60 +1.2
586,460 - ydjG MCAODC_18640 0.60 +0.0
586,460 - ydjG MCAODC_18640 0.60 -2.0
586,460 - ydjG MCAODC_18640 0.60 +1.0
586,460 - ydjG MCAODC_18640 0.60 +0.5
586,460 - ydjG MCAODC_18640 0.60 +0.4
586,460 - ydjG MCAODC_18640 0.60 +1.2
586,460 - ydjG MCAODC_18640 0.60 -0.8
586,541 - ydjG MCAODC_18640 0.68 -2.0
586,615 - ydjG MCAODC_18640 0.75 +0.3
586,615 - ydjG MCAODC_18640 0.75 +1.5
586,658 + ydjG MCAODC_18640 0.80 +0.5
586,668 - ydjG MCAODC_18640 0.81 +0.7
586,679 + ydjG MCAODC_18640 0.82 -0.2
586,680 - ydjG MCAODC_18640 0.82 +0.5
586,680 - ydjG MCAODC_18640 0.82 +0.3
586,682 - ydjG MCAODC_18640 0.82 -1.2
586,695 - ydjG MCAODC_18640 0.83 +1.5
586,743 - ydjG MCAODC_18640 0.88 -2.3
586,743 - ydjG MCAODC_18640 0.88 -2.4
586,746 + ydjG MCAODC_18640 0.89 +0.5
586,746 + ydjG MCAODC_18640 0.89 -2.5
586,938 + +1.7
586,939 - +1.6
586,950 - -0.0
587,001 + rbsK MCAODC_18645 0.14 -0.1
587,002 - rbsK MCAODC_18645 0.15 +2.4
587,002 - rbsK MCAODC_18645 0.15 -1.2
587,234 - rbsK MCAODC_18645 0.39 -0.9
587,252 + rbsK MCAODC_18645 0.41 -0.1
587,252 + rbsK MCAODC_18645 0.41 -3.9
587,289 - rbsK MCAODC_18645 0.45 +0.5
587,376 - rbsK MCAODC_18645 0.55 -0.1
587,516 + rbsK MCAODC_18645 0.70 +0.4
587,517 - rbsK MCAODC_18645 0.70 -1.9
587,628 - rbsK MCAODC_18645 0.82 +1.2
587,649 - rbsK MCAODC_18645 0.84 +2.4
588,147 + ydjI MCAODC_18650 0.41 +0.4
588,186 - ydjI MCAODC_18650 0.46 +0.0
588,749 - -1.8

Or see this region's nucleotide sequence