Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt selD and ydjA are separated by 116 nucleotides ydjA and sppA are separated by 160 nucleotides sppA and sIMPL are separated by 115 nucleotides sIMPL and ansA are separated by 131 nucleotides
MCAODC_18585: selD - selenide, water dikinase SelD, at 575,745 to 576,788
selD
MCAODC_18590: ydjA - NAD(P)H nitroreductase, at 576,905 to 577,456
ydjA
MCAODC_18595: sppA - signal peptide peptidase SppA, at 577,617 to 579,473
sppA
MCAODC_18600: sIMPL - SIMPL domain-containing protein, at 579,589 to 580,299
sIMPL
MCAODC_18605: ansA - asparaginase, at 580,431 to 581,447
ansA
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 576.903 kb on + strand at 576.912 kb on + strand at 576.913 kb on - strand at 576.953 kb on - strand at 576.953 kb on - strand at 576.953 kb on - strand at 577.049 kb on + strand, within ydjA at 577.157 kb on - strand, within ydjA at 577.157 kb on - strand, within ydjA at 577.339 kb on + strand, within ydjA at 577.339 kb on + strand, within ydjA at 577.340 kb on - strand, within ydjA at 577.463 kb on - strand at 577.575 kb on + strand at 577.575 kb on + strand at 577.575 kb on + strand at 577.576 kb on - strand at 577.601 kb on + strand at 577.614 kb on + strand at 577.614 kb on + strand at 577.693 kb on + strand at 577.697 kb on + strand at 577.952 kb on + strand, within sppA at 578.006 kb on + strand, within sppA at 578.013 kb on + strand, within sppA at 578.014 kb on - strand, within sppA at 578.079 kb on + strand, within sppA at 578.097 kb on + strand, within sppA at 578.098 kb on - strand, within sppA at 578.238 kb on + strand, within sppA at 578.239 kb on - strand, within sppA at 578.340 kb on - strand, within sppA at 578.554 kb on - strand, within sppA at 578.909 kb on + strand, within sppA at 578.909 kb on + strand, within sppA at 578.910 kb on - strand, within sppA at 578.969 kb on + strand, within sppA at 579.071 kb on + strand, within sppA at 579.071 kb on + strand, within sppA at 579.071 kb on + strand, within sppA at 579.128 kb on + strand, within sppA at 579.264 kb on + strand, within sppA at 579.355 kb on + strand at 579.471 kb on + strand at 579.472 kb on - strand at 579.548 kb on + strand at 579.608 kb on + strand at 579.609 kb on - strand at 579.672 kb on + strand, within sIMPL at 579.697 kb on + strand, within sIMPL at 580.179 kb on + strand, within sIMPL at 580.251 kb on + strand at 580.363 kb on + strand at 580.363 kb on + strand at 580.392 kb on - strand at 580.421 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 576,903 + -1.6 576,912 + -2.2 576,913 - -0.6 576,953 - +0.7 576,953 - -0.9 576,953 - -0.3 577,049 + ydjA MCAODC_18590 0.26 +0.5 577,157 - ydjA MCAODC_18590 0.46 +0.4 577,157 - ydjA MCAODC_18590 0.46 +0.3 577,339 + ydjA MCAODC_18590 0.79 +0.8 577,339 + ydjA MCAODC_18590 0.79 -0.2 577,340 - ydjA MCAODC_18590 0.79 +0.5 577,463 - +2.1 577,575 + +1.3 577,575 + -0.8 577,575 + +0.5 577,576 - +1.3 577,601 + -0.1 577,614 + +1.5 577,614 + +0.0 577,693 + -1.6 577,697 + -1.6 577,952 + sppA MCAODC_18595 0.18 +1.3 578,006 + sppA MCAODC_18595 0.21 +0.7 578,013 + sppA MCAODC_18595 0.21 +1.2 578,014 - sppA MCAODC_18595 0.21 +0.3 578,079 + sppA MCAODC_18595 0.25 +2.8 578,097 + sppA MCAODC_18595 0.26 +1.2 578,098 - sppA MCAODC_18595 0.26 -0.4 578,238 + sppA MCAODC_18595 0.33 -0.5 578,239 - sppA MCAODC_18595 0.33 +0.3 578,340 - sppA MCAODC_18595 0.39 +0.0 578,554 - sppA MCAODC_18595 0.50 +0.5 578,909 + sppA MCAODC_18595 0.70 -1.9 578,909 + sppA MCAODC_18595 0.70 +0.9 578,910 - sppA MCAODC_18595 0.70 +2.7 578,969 + sppA MCAODC_18595 0.73 -1.4 579,071 + sppA MCAODC_18595 0.78 +0.5 579,071 + sppA MCAODC_18595 0.78 -2.4 579,071 + sppA MCAODC_18595 0.78 +0.3 579,128 + sppA MCAODC_18595 0.81 +1.5 579,264 + sppA MCAODC_18595 0.89 -1.3 579,355 + +1.2 579,471 + -1.1 579,472 - -0.7 579,548 + +0.4 579,608 + +0.1 579,609 - +0.3 579,672 + sIMPL MCAODC_18600 0.12 -0.7 579,697 + sIMPL MCAODC_18600 0.15 +0.5 580,179 + sIMPL MCAODC_18600 0.83 -1.1 580,251 + +0.3 580,363 + +1.2 580,363 + +2.3 580,392 - +0.1 580,421 + -1.3
Or see this region's nucleotide sequence