Strain Fitness in Escherichia coli ECRC101 around MCAODC_18290

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntselO and ydiV are separated by 62 nucleotidesydiV and nlpC are separated by 246 nucleotidesnlpC and btuD are separated by 77 nucleotides MCAODC_18285: selO - protein adenylyltransferase SelO, at 518,790 to 520,226 selO MCAODC_18290: ydiV - anti-FlhDC factor, at 520,289 to 521,002 ydiV MCAODC_18295: nlpC - putative endopeptidase NlpC, at 521,249 to 521,713 nlpC MCAODC_18300: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 521,791 to 522,540 btuD Position (kb) 520 521 522Strain fitness (log2 ratio) -2 -1 0 1 2 3at 519.307 kb on - strand, within selOat 519.346 kb on - strand, within selOat 519.346 kb on - strand, within selOat 519.431 kb on - strand, within selOat 519.495 kb on - strand, within selOat 519.551 kb on + strand, within selOat 519.552 kb on - strand, within selOat 519.584 kb on - strand, within selOat 519.780 kb on - strand, within selOat 519.855 kb on + strand, within selOat 519.859 kb on - strand, within selOat 519.926 kb on + strand, within selOat 519.958 kb on - strand, within selOat 520.124 kb on + strandat 520.127 kb on + strandat 520.149 kb on - strandat 520.153 kb on - strandat 520.153 kb on - strandat 520.176 kb on - strandat 520.178 kb on - strandat 520.178 kb on - strandat 520.227 kb on - strandat 520.249 kb on - strandat 520.268 kb on - strandat 521.061 kb on - strandat 521.150 kb on - strandat 521.192 kb on - strandat 521.196 kb on + strandat 521.287 kb on - strandat 521.338 kb on + strand, within nlpCat 521.589 kb on - strand, within nlpCat 521.924 kb on - strand, within btuD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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519,307 - selO MCAODC_18285 0.36 -0.5
519,346 - selO MCAODC_18285 0.39 +0.2
519,346 - selO MCAODC_18285 0.39 -0.6
519,431 - selO MCAODC_18285 0.45 -1.2
519,495 - selO MCAODC_18285 0.49 +0.0
519,551 + selO MCAODC_18285 0.53 -0.3
519,552 - selO MCAODC_18285 0.53 +2.5
519,584 - selO MCAODC_18285 0.55 -0.8
519,780 - selO MCAODC_18285 0.69 +1.4
519,855 + selO MCAODC_18285 0.74 -0.5
519,859 - selO MCAODC_18285 0.74 +0.8
519,926 + selO MCAODC_18285 0.79 +0.3
519,958 - selO MCAODC_18285 0.81 +1.7
520,124 + -2.1
520,127 + +1.0
520,149 - +3.3
520,153 - +0.7
520,153 - +0.4
520,176 - +0.2
520,178 - -1.6
520,178 - +0.5
520,227 - -0.1
520,249 - -2.3
520,268 - +1.9
521,061 - -2.4
521,150 - -0.4
521,192 - -0.1
521,196 + -0.6
521,287 - +0.5
521,338 + nlpC MCAODC_18295 0.19 +0.3
521,589 - nlpC MCAODC_18295 0.73 +0.2
521,924 - btuD MCAODC_18300 0.18 +0.7

Or see this region's nucleotide sequence