Strain Fitness in Escherichia coli ECRC101 around MCAODC_16795

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyneE and uxaB are separated by 196 nucleotidesuxaB and gGDEF are separated by 226 nucleotides MCAODC_16790: yneE - UPF0187 protein YneE, at 269,604 to 270,518 yneE MCAODC_16795: uxaB - tagaturonate reductase, at 270,715 to 272,166 uxaB MCAODC_16800: gGDEF - diguanylate cyclase, at 272,393 to 273,811 gGDEF Position (kb) 270 271 272 273Strain fitness (log2 ratio) -2 -1 0 1 2at 270.136 kb on - strand, within yneEat 270.190 kb on - strand, within yneEat 270.303 kb on - strand, within yneEat 270.404 kb on + strand, within yneEat 270.432 kb on + strandat 270.435 kb on + strandat 270.435 kb on + strandat 270.551 kb on + strandat 270.717 kb on - strandat 270.717 kb on - strandat 270.935 kb on - strand, within uxaBat 270.942 kb on - strand, within uxaBat 271.078 kb on - strand, within uxaBat 271.111 kb on - strand, within uxaBat 271.203 kb on - strand, within uxaBat 271.256 kb on - strand, within uxaBat 271.256 kb on - strand, within uxaBat 271.434 kb on - strand, within uxaBat 271.492 kb on - strand, within uxaBat 271.576 kb on - strand, within uxaBat 271.643 kb on + strand, within uxaBat 272.115 kb on + strandat 272.546 kb on + strand, within gGDEFat 272.767 kb on - strand, within gGDEFat 272.767 kb on - strand, within gGDEFat 272.767 kb on - strand, within gGDEFat 272.791 kb on - strand, within gGDEFat 272.859 kb on + strand, within gGDEFat 273.058 kb on + strand, within gGDEF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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270,136 - yneE MCAODC_16790 0.58 +0.5
270,190 - yneE MCAODC_16790 0.64 +0.1
270,303 - yneE MCAODC_16790 0.76 +0.6
270,404 + yneE MCAODC_16790 0.87 -1.1
270,432 + -1.5
270,435 + +0.0
270,435 + +0.7
270,551 + +0.2
270,717 - +1.0
270,717 - +0.0
270,935 - uxaB MCAODC_16795 0.15 -2.5
270,942 - uxaB MCAODC_16795 0.16 +1.3
271,078 - uxaB MCAODC_16795 0.25 -2.1
271,111 - uxaB MCAODC_16795 0.27 -2.6
271,203 - uxaB MCAODC_16795 0.34 +1.6
271,256 - uxaB MCAODC_16795 0.37 -0.3
271,256 - uxaB MCAODC_16795 0.37 -0.9
271,434 - uxaB MCAODC_16795 0.50 -0.6
271,492 - uxaB MCAODC_16795 0.54 -1.6
271,576 - uxaB MCAODC_16795 0.59 +0.1
271,643 + uxaB MCAODC_16795 0.64 +2.2
272,115 + -0.8
272,546 + gGDEF MCAODC_16800 0.11 -0.1
272,767 - gGDEF MCAODC_16800 0.26 +1.2
272,767 - gGDEF MCAODC_16800 0.26 +1.6
272,767 - gGDEF MCAODC_16800 0.26 -2.4
272,791 - gGDEF MCAODC_16800 0.28 -1.3
272,859 + gGDEF MCAODC_16800 0.33 +1.2
273,058 + gGDEF MCAODC_16800 0.47 -1.5

Or see this region's nucleotide sequence