Strain Fitness in Escherichia coli ECRC101 around MCAODC_12230

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,422,008	-	dmsB	MCAODC_12220	0.77	+0.7
2,422,020	-	dmsB	MCAODC_12220	0.79	+1.0
2,422,041	+	dmsB	MCAODC_12220	0.82	-1.8
2,422,085	+	dmsB	MCAODC_12220	0.89	+0.9
2,422,106	+				-1.0
2,422,155	-				-1.5
2,422,160	+				-3.0
2,422,170	+				+0.9
2,422,170	+				-6.9
2,422,182	-				-0.2
2,422,230	+	dmsC	MCAODC_12225	0.10	+0.2
2,422,231	-	dmsC	MCAODC_12225	0.11	+0.6
2,422,231	-	dmsC	MCAODC_12225	0.11	+0.0
2,422,235	+	dmsC	MCAODC_12225	0.11	-0.5
2,422,235	+	dmsC	MCAODC_12225	0.11	-0.2
2,422,235	+	dmsC	MCAODC_12225	0.11	+1.3
2,422,275	-	dmsC	MCAODC_12225	0.16	+0.1
2,422,275	-	dmsC	MCAODC_12225	0.16	-1.5
2,422,317	+	dmsC	MCAODC_12225	0.21	+0.5
2,422,322	+	dmsC	MCAODC_12225	0.22	-0.3
2,422,322	+	dmsC	MCAODC_12225	0.22	-0.0
2,422,322	+	dmsC	MCAODC_12225	0.22	+1.0
2,422,322	+	dmsC	MCAODC_12225	0.22	+0.2
2,422,323	-	dmsC	MCAODC_12225	0.22	+2.2
2,422,323	-	dmsC	MCAODC_12225	0.22	-2.7
2,422,323	-	dmsC	MCAODC_12225	0.22	+0.7
2,422,323	-	dmsC	MCAODC_12225	0.22	+0.3
2,422,323	-	dmsC	MCAODC_12225	0.22	-0.3
2,422,323	-	dmsC	MCAODC_12225	0.22	+0.5
2,422,341	+	dmsC	MCAODC_12225	0.24	+1.6
2,422,341	+	dmsC	MCAODC_12225	0.24	+2.0
2,422,341	+	dmsC	MCAODC_12225	0.24	+0.6
2,422,396	-	dmsC	MCAODC_12225	0.31	-0.2
2,422,396	-	dmsC	MCAODC_12225	0.31	-1.2
2,422,412	-	dmsC	MCAODC_12225	0.33	+0.1
2,422,439	+	dmsC	MCAODC_12225	0.36	+0.5
2,422,451	+	dmsC	MCAODC_12225	0.37	-1.8
2,422,452	-	dmsC	MCAODC_12225	0.37	+1.1
2,422,479	+	dmsC	MCAODC_12225	0.41	-2.2
2,422,479	+	dmsC	MCAODC_12225	0.41	-0.2
2,422,480	-	dmsC	MCAODC_12225	0.41	+0.8
2,422,480	-	dmsC	MCAODC_12225	0.41	-0.2
2,422,484	+	dmsC	MCAODC_12225	0.41	-0.7
2,422,531	+	dmsC	MCAODC_12225	0.47	+0.6
2,422,531	+	dmsC	MCAODC_12225	0.47	-0.4
2,422,531	+	dmsC	MCAODC_12225	0.47	+0.9
2,422,539	+	dmsC	MCAODC_12225	0.48	+1.4
2,422,540	-	dmsC	MCAODC_12225	0.48	+1.4
2,422,564	+	dmsC	MCAODC_12225	0.51	+0.4
2,422,564	+	dmsC	MCAODC_12225	0.51	+0.1
2,422,565	-	dmsC	MCAODC_12225	0.51	-2.3
2,422,565	-	dmsC	MCAODC_12225	0.51	-0.1
2,422,565	-	dmsC	MCAODC_12225	0.51	+0.8
2,422,565	-	dmsC	MCAODC_12225	0.51	-0.1
2,422,565	-	dmsC	MCAODC_12225	0.51	+0.6
2,422,565	-	dmsC	MCAODC_12225	0.51	-1.0
2,422,565	-	dmsC	MCAODC_12225	0.51	-1.0
2,422,578	+	dmsC	MCAODC_12225	0.53	-1.2
2,422,579	-	dmsC	MCAODC_12225	0.53	+0.2
2,422,579	-	dmsC	MCAODC_12225	0.53	+0.4
2,422,579	-	dmsC	MCAODC_12225	0.53	+0.3
2,422,586	+	dmsC	MCAODC_12225	0.54	-0.4
2,422,586	+	dmsC	MCAODC_12225	0.54	-2.6
2,422,586	+	dmsC	MCAODC_12225	0.54	+1.4
2,422,586	+	dmsC	MCAODC_12225	0.54	-0.1
2,422,587	-	dmsC	MCAODC_12225	0.54	+1.2
2,422,587	-	dmsC	MCAODC_12225	0.54	+0.6
2,422,587	-	dmsC	MCAODC_12225	0.54	+0.2
2,422,587	-	dmsC	MCAODC_12225	0.54	+0.9
2,422,587	-	dmsC	MCAODC_12225	0.54	-0.7
2,422,591	-	dmsC	MCAODC_12225	0.54	-0.5
2,422,619	+	dmsC	MCAODC_12225	0.58	-0.1
2,422,620	-	dmsC	MCAODC_12225	0.58	-0.1
2,422,620	-	dmsC	MCAODC_12225	0.58	-3.3
2,422,633	-	dmsC	MCAODC_12225	0.59	+1.7
2,422,633	-	dmsC	MCAODC_12225	0.59	-0.2
2,422,742	+	dmsC	MCAODC_12225	0.73	-0.3
2,422,763	+	dmsC	MCAODC_12225	0.75	-0.9
2,422,814	+	dmsC	MCAODC_12225	0.82	-2.3
2,422,814	+	dmsC	MCAODC_12225	0.82	+0.7
2,422,823	+	dmsC	MCAODC_12225	0.83	+1.9
2,422,823	+	dmsC	MCAODC_12225	0.83	+0.7
2,422,824	-	dmsC	MCAODC_12225	0.83	+0.5
2,422,824	-	dmsC	MCAODC_12225	0.83	+0.6
2,422,824	-	dmsC	MCAODC_12225	0.83	+0.7
2,422,910	+				+1.1
2,422,910	+				-0.0
2,422,911	-				+0.2
2,422,932	+				-2.1
2,422,932	+				-4.4
2,422,933	-				+1.2
2,422,957	-				+2.3
2,422,969	+				+0.8
2,422,970	-				+0.6
2,422,970	-				+1.1
2,422,976	+				+0.1
2,423,086	+	dsrA	MCAODC_12230	0.14	+0.0
2,423,108	+	dsrA	MCAODC_12230	0.17	+0.2
2,423,108	+	dsrA	MCAODC_12230	0.17	+1.0
2,423,109	-	dsrA	MCAODC_12230	0.17	+0.9
2,423,109	-	dsrA	MCAODC_12230	0.17	+0.1
2,423,132	+	dsrA	MCAODC_12230	0.20	+0.3
2,423,132	+	dsrA	MCAODC_12230	0.20	+1.7
2,423,132	+	dsrA	MCAODC_12230	0.20	+0.6
2,423,132	+	dsrA	MCAODC_12230	0.20	+0.8
2,423,151	-	dsrA	MCAODC_12230	0.22	+0.0
2,423,173	+	dsrA	MCAODC_12230	0.24	-0.9
2,423,372	-	dsrA	MCAODC_12230	0.48	-0.1
2,423,372	-	dsrA	MCAODC_12230	0.48	+0.4
2,423,381	+	dsrA	MCAODC_12230	0.49	-0.8
2,423,381	+	dsrA	MCAODC_12230	0.49	+0.3
2,423,452	+	dsrA	MCAODC_12230	0.57	-1.5
2,423,452	+	dsrA	MCAODC_12230	0.57	+0.8
2,423,453	-	dsrA	MCAODC_12230	0.57	-0.2
2,423,453	-	dsrA	MCAODC_12230	0.57	-2.4
2,423,453	-	dsrA	MCAODC_12230	0.57	-2.1
2,423,464	+	dsrA	MCAODC_12230	0.58	+1.4
2,423,464	+	dsrA	MCAODC_12230	0.58	+0.4
2,423,465	-	dsrA	MCAODC_12230	0.58	-0.4
2,423,473	+	dsrA	MCAODC_12230	0.59	-2.3
2,423,474	-	dsrA	MCAODC_12230	0.60	+0.8
2,423,478	+	dsrA	MCAODC_12230	0.60	+0.6
2,423,479	-	dsrA	MCAODC_12230	0.60	-0.8
2,423,479	-	dsrA	MCAODC_12230	0.60	+1.8
2,423,479	-	dsrA	MCAODC_12230	0.60	-0.0
2,423,479	-	dsrA	MCAODC_12230	0.60	+0.6
2,423,479	-	dsrA	MCAODC_12230	0.60	-0.0
2,423,482	+	dsrA	MCAODC_12230	0.60	+0.9
2,423,495	+	dsrA	MCAODC_12230	0.62	+2.7
2,423,596	+	dsrA	MCAODC_12230	0.74	+1.2
2,423,602	+	dsrA	MCAODC_12230	0.75	-1.0
2,423,603	-	dsrA	MCAODC_12230	0.75	+0.8
2,423,603	-	dsrA	MCAODC_12230	0.75	-3.1
2,423,637	-	dsrA	MCAODC_12230	0.79	-0.5
2,423,637	-	dsrA	MCAODC_12230	0.79	+0.3
2,423,750	+				+0.4
2,423,751	-				-0.4
2,423,817	+				-2.0
2,423,818	-				-0.4
2,423,898	+				+0.7
2,423,899	-				+1.3
2,423,899	-				-1.3
2,423,900	+				+1.0
2,423,901	-				-0.2
2,423,947	+				-0.5
2,423,947	+				+0.2
2,423,956	-				-2.7
2,423,965	+				-0.6
2,424,022	+	ndk	MCAODC_12235	0.14	+0.7
2,424,022	+	ndk	MCAODC_12235	0.14	+0.7
2,424,022	+	ndk	MCAODC_12235	0.14	-0.2
2,424,025	+	ndk	MCAODC_12235	0.15	+0.7
2,424,026	-	ndk	MCAODC_12235	0.15	-3.2
2,424,111	-	ndk	MCAODC_12235	0.35	-2.6
2,424,442	+				+1.0
2,424,442	+				-0.0
2,424,519	-				+0.5
2,424,519	-				-0.2
2,424,519	-				+0.2
2,424,521	+				-0.3
2,424,521	+				+1.0
2,424,535	+				+1.3
2,424,536	-				+2.0
2,424,536	-				-0.8
2,424,536	-				-1.0
2,424,536	-				+0.6
2,424,540	+				+0.3
2,424,540	+				+2.2
2,424,540	+				+0.3
2,424,540	+				-0.2
2,424,540	+				+0.1
2,424,540	+				+1.1
2,424,540	+				-0.1
2,424,541	-				+0.2
2,424,541	-				+1.4
2,424,541	-				+0.5
2,424,541	-				-1.6
2,424,541	-				-1.3
2,424,541	-				-2.0
2,424,554	+				-0.9
2,424,555	-				-0.1
2,424,644	+				+1.2
2,424,645	-				+0.3
2,424,688	+	rlmN	MCAODC_12240	0.13	-0.6
2,424,688	+	rlmN	MCAODC_12240	0.13	-0.8
2,424,688	+	rlmN	MCAODC_12240	0.13	-3.1
2,424,688	+	rlmN	MCAODC_12240	0.13	+1.3
2,424,688	+	rlmN	MCAODC_12240	0.13	+1.1
2,424,688	+	rlmN	MCAODC_12240	0.13	+0.6
2,424,689	-	rlmN	MCAODC_12240	0.13	+1.3
2,424,689	-	rlmN	MCAODC_12240	0.13	+0.2
2,424,689	-	rlmN	MCAODC_12240	0.13	-0.5
2,424,689	-	rlmN	MCAODC_12240	0.13	+1.5
2,424,689	-	rlmN	MCAODC_12240	0.13	+0.5
2,424,689	-	rlmN	MCAODC_12240	0.13	-0.8
2,424,694	+	rlmN	MCAODC_12240	0.13	-0.0
2,424,694	+	rlmN	MCAODC_12240	0.13	-3.8