Strain Fitness in Escherichia coli ECRC101 around MCAODC_11085

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,208,234	+	hypD	MCAODC_11075	0.38	+2.3
2,208,290	+	hypD	MCAODC_11075	0.43	+1.2
2,208,296	+	hypD	MCAODC_11075	0.43	+0.6
2,208,298	+	hypD	MCAODC_11075	0.44	+1.0
2,208,320	+	hypD	MCAODC_11075	0.46	+0.4
2,208,321	-	hypD	MCAODC_11075	0.46	+1.1
2,208,321	-	hypD	MCAODC_11075	0.46	-1.5
2,208,324	-	hypD	MCAODC_11075	0.46	+0.9
2,208,324	-	hypD	MCAODC_11075	0.46	-1.0
2,208,401	+	hypD	MCAODC_11075	0.53	+0.2
2,208,401	+	hypD	MCAODC_11075	0.53	-1.4
2,208,401	+	hypD	MCAODC_11075	0.53	+0.1
2,208,401	+	hypD	MCAODC_11075	0.53	+1.0
2,208,402	-	hypD	MCAODC_11075	0.53	-1.0
2,208,402	-	hypD	MCAODC_11075	0.53	+0.1
2,208,402	-	hypD	MCAODC_11075	0.53	+0.1
2,208,402	-	hypD	MCAODC_11075	0.53	-2.4
2,208,404	+	hypD	MCAODC_11075	0.53	+0.5
2,208,404	+	hypD	MCAODC_11075	0.53	+1.2
2,208,405	-	hypD	MCAODC_11075	0.53	-0.9
2,208,405	-	hypD	MCAODC_11075	0.53	-0.0
2,208,405	-	hypD	MCAODC_11075	0.53	+0.8
2,208,562	+	hypD	MCAODC_11075	0.67	-1.3
2,208,563	-	hypD	MCAODC_11075	0.67	-0.4
2,208,763	-	hypD	MCAODC_11075	0.85	+0.7
2,208,844	+				+0.4
2,208,844	+				+0.9
2,208,844	+				+0.1
2,208,845	-				+0.2
2,208,882	+				-0.0
2,208,883	-				-3.0
2,208,931	-				-2.9
2,208,945	+				+1.8
2,208,945	+				-1.7
2,209,024	+	hypC	MCAODC_11080	0.35	-0.6
2,209,024	+	hypC	MCAODC_11080	0.35	-0.9
2,209,025	-	hypC	MCAODC_11080	0.35	+0.2
2,209,025	-	hypC	MCAODC_11080	0.35	+0.8
2,209,025	-	hypC	MCAODC_11080	0.35	-1.8
2,209,029	-	hypC	MCAODC_11080	0.37	+0.9
2,209,029	-	hypC	MCAODC_11080	0.37	+0.4
2,209,052	+	hypC	MCAODC_11080	0.45	-0.3
2,209,058	+	hypC	MCAODC_11080	0.47	-0.0
2,209,194	-				-0.5
2,209,260	+				+0.0
2,209,384	-	hypB	MCAODC_11085	0.22	+0.6
2,209,474	+	hypB	MCAODC_11085	0.32	-0.2
2,209,691	-	hypB	MCAODC_11085	0.57	-1.1
2,209,887	-	hypB	MCAODC_11085	0.80	+1.5
2,209,936	-	hypB	MCAODC_11085	0.85	-2.0
2,210,008	-				+0.4
2,210,028	-				+1.8
2,210,028	-				+0.3
2,210,058	+				+1.0
2,210,059	-				+0.9
2,210,080	+				-3.6
2,210,081	-				+0.6
2,210,125	+	hypA	MCAODC_11090	0.16	-1.0
2,210,126	-	hypA	MCAODC_11090	0.17	-0.4
2,210,126	-	hypA	MCAODC_11090	0.17	+0.5
2,210,126	-	hypA	MCAODC_11090	0.17	-1.3
2,210,126	-	hypA	MCAODC_11090	0.17	+0.6
2,210,183	+	hypA	MCAODC_11090	0.33	+1.5
2,210,183	+	hypA	MCAODC_11090	0.33	+0.4
2,210,184	-	hypA	MCAODC_11090	0.33	-3.0
2,210,184	-	hypA	MCAODC_11090	0.33	-0.6
2,210,184	-	hypA	MCAODC_11090	0.33	+0.1
2,210,184	-	hypA	MCAODC_11090	0.33	+0.2
2,210,184	-	hypA	MCAODC_11090	0.33	-0.3
2,210,238	+	hypA	MCAODC_11090	0.48	+0.0
2,210,407	+				+1.4
2,210,407	+				-1.0
2,210,419	-				-0.2
2,210,431	+				-0.7
2,210,435	+				+0.8
2,210,436	-				+1.2
2,210,436	-				+0.8
2,210,488	+				-1.1
2,210,489	-				+0.3
2,210,561	-				-1.6
2,210,635	+				-0.3
2,210,635	+				-0.8
2,210,635	+				-1.6
2,210,636	-				+0.1
2,210,646	+				+0.6
2,210,646	+				+1.4
2,210,647	-				+1.4
2,210,708	+	hycA	MCAODC_11095	0.17	+0.5
2,210,709	-	hycA	MCAODC_11095	0.17	+0.2
2,210,709	-	hycA	MCAODC_11095	0.17	+2.4
2,210,822	+	hycA	MCAODC_11095	0.42	-1.4
2,210,822	+	hycA	MCAODC_11095	0.42	+0.4
2,210,822	+	hycA	MCAODC_11095	0.42	+3.1
2,210,823	-	hycA	MCAODC_11095	0.42	-1.0
2,210,823	-	hycA	MCAODC_11095	0.42	-1.5
2,210,823	-	hycA	MCAODC_11095	0.42	+0.0
2,210,864	+	hycA	MCAODC_11095	0.51	+1.2
2,210,864	+	hycA	MCAODC_11095	0.51	-0.2
2,210,864	+	hycA	MCAODC_11095	0.51	+0.7
2,210,865	-	hycA	MCAODC_11095	0.51	-2.1
2,210,867	+	hycA	MCAODC_11095	0.51	-3.5
2,210,867	+	hycA	MCAODC_11095	0.51	-0.1
2,210,867	+	hycA	MCAODC_11095	0.51	-2.7
2,210,984	+	hycA	MCAODC_11095	0.77	-1.9
2,210,984	+	hycA	MCAODC_11095	0.77	+0.4
2,210,984	+	hycA	MCAODC_11095	0.77	-1.4
2,210,985	-	hycA	MCAODC_11095	0.77	+1.3
2,211,018	+	hycA	MCAODC_11095	0.84	-0.5
2,211,018	+	hycA	MCAODC_11095	0.84	-0.1
2,211,018	+	hycA	MCAODC_11095	0.84	-0.0
2,211,018	+	hycA	MCAODC_11095	0.84	-2.4
2,211,018	+	hycA	MCAODC_11095	0.84	+1.6
2,211,018	+	hycA	MCAODC_11095	0.84	-2.0
2,211,019	-	hycA	MCAODC_11095	0.84	+0.7
2,211,019	-	hycA	MCAODC_11095	0.84	+0.5
2,211,019	-	hycA	MCAODC_11095	0.84	-1.1
2,211,019	-	hycA	MCAODC_11095	0.84	-1.1
2,211,019	-	hycA	MCAODC_11095	0.84	+1.8
2,211,020	+	hycA	MCAODC_11095	0.84	+1.9
2,211,020	+	hycA	MCAODC_11095	0.84	-1.0
2,211,020	+	hycA	MCAODC_11095	0.84	+1.0
2,211,021	-	hycA	MCAODC_11095	0.85	-0.3
2,211,054	+				+0.5