Strain Fitness in Escherichia coli ECRC101 around MCAODC_09370

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,869,649	+				+1.1
1,869,655	+	fepD	MCAODC_09365	0.11	-0.9
1,869,700	+	fepD	MCAODC_09365	0.15	+0.6
1,869,700	+	fepD	MCAODC_09365	0.15	-1.5
1,869,730	+	fepD	MCAODC_09365	0.18	+0.7
1,869,730	+	fepD	MCAODC_09365	0.18	-0.4
1,869,747	+	fepD	MCAODC_09365	0.19	-0.3
1,869,747	+	fepD	MCAODC_09365	0.19	+0.5
1,869,748	-	fepD	MCAODC_09365	0.19	-0.1
1,869,748	-	fepD	MCAODC_09365	0.19	+1.3
1,869,748	-	fepD	MCAODC_09365	0.19	+1.5
1,869,749	+	fepD	MCAODC_09365	0.20	-0.4
1,869,749	+	fepD	MCAODC_09365	0.20	+0.9
1,869,749	+	fepD	MCAODC_09365	0.20	+2.2
1,869,749	+	fepD	MCAODC_09365	0.20	+0.7
1,869,749	+	fepD	MCAODC_09365	0.20	-0.7
1,869,749	+	fepD	MCAODC_09365	0.20	+1.3
1,869,749	+	fepD	MCAODC_09365	0.20	-0.3
1,869,793	+	fepD	MCAODC_09365	0.24	+0.6
1,869,793	+	fepD	MCAODC_09365	0.24	-1.3
1,869,808	+	fepD	MCAODC_09365	0.25	-0.0
1,869,808	+	fepD	MCAODC_09365	0.25	-1.6
1,869,808	+	fepD	MCAODC_09365	0.25	-0.1
1,869,809	-	fepD	MCAODC_09365	0.25	-0.3
1,869,809	-	fepD	MCAODC_09365	0.25	+0.5
1,869,809	-	fepD	MCAODC_09365	0.25	-0.7
1,869,812	+	fepD	MCAODC_09365	0.26	-0.7
1,869,813	-	fepD	MCAODC_09365	0.26	-1.1
1,869,813	-	fepD	MCAODC_09365	0.26	+1.0
1,869,868	+	fepD	MCAODC_09365	0.31	+3.7
1,869,890	+	fepD	MCAODC_09365	0.33	-2.3
1,869,890	+	fepD	MCAODC_09365	0.33	-3.7
1,869,891	-	fepD	MCAODC_09365	0.33	-1.2
1,870,041	-	fepD	MCAODC_09365	0.48	+0.4
1,870,078	+	fepD	MCAODC_09365	0.51	+1.1
1,870,078	+	fepD	MCAODC_09365	0.51	+0.5
1,870,078	+	fepD	MCAODC_09365	0.51	+0.6
1,870,079	-	fepD	MCAODC_09365	0.51	-0.3
1,870,079	-	fepD	MCAODC_09365	0.51	-0.5
1,870,079	-	fepD	MCAODC_09365	0.51	-1.1
1,870,079	-	fepD	MCAODC_09365	0.51	-2.8
1,870,082	+	fepD	MCAODC_09365	0.52	+0.5
1,870,083	-	fepD	MCAODC_09365	0.52	+1.7
1,870,083	-	fepD	MCAODC_09365	0.52	+0.4
1,870,108	+	fepD	MCAODC_09365	0.54	-2.2
1,870,152	-	fepD	MCAODC_09365	0.58	-0.7
1,870,163	-	fepD	MCAODC_09365	0.59	-0.1
1,870,163	-	fepD	MCAODC_09365	0.59	-0.9
1,870,204	+	fepD	MCAODC_09365	0.63	+0.8
1,870,277	+	fepD	MCAODC_09365	0.70	+0.6
1,870,277	+	fepD	MCAODC_09365	0.70	-1.4
1,870,277	+	fepD	MCAODC_09365	0.70	-0.5
1,870,278	-	fepD	MCAODC_09365	0.71	+0.8
1,870,297	+	fepD	MCAODC_09365	0.72	+0.1
1,870,297	+	fepD	MCAODC_09365	0.72	+0.4
1,870,297	+	fepD	MCAODC_09365	0.72	+0.6
1,870,297	+	fepD	MCAODC_09365	0.72	-0.7
1,870,316	-	fepD	MCAODC_09365	0.74	-0.6
1,870,349	+	fepD	MCAODC_09365	0.77	+0.1
1,870,350	-	fepD	MCAODC_09365	0.77	+1.1
1,870,372	+	fepD	MCAODC_09365	0.80	+0.8
1,870,373	-	fepD	MCAODC_09365	0.80	+0.1
1,870,382	+	fepD	MCAODC_09365	0.81	+0.1
1,870,382	+	fepD	MCAODC_09365	0.81	-0.1
1,870,382	+	fepD	MCAODC_09365	0.81	+0.3
1,870,382	+	fepD	MCAODC_09365	0.81	-1.5
1,870,382	+	fepD	MCAODC_09365	0.81	-1.3
1,870,382	+	fepD	MCAODC_09365	0.81	+0.4
1,870,382	+	fepD	MCAODC_09365	0.81	-1.7
1,870,383	-	fepD	MCAODC_09365	0.81	-0.2
1,870,383	-	fepD	MCAODC_09365	0.81	-0.1
1,870,383	-	fepD	MCAODC_09365	0.81	+0.2
1,870,384	+	fepD	MCAODC_09365	0.81	+0.3
1,870,384	+	fepD	MCAODC_09365	0.81	-0.2
1,870,384	+	fepD	MCAODC_09365	0.81	-0.5
1,870,384	+	fepD	MCAODC_09365	0.81	-0.3
1,870,384	+	fepD	MCAODC_09365	0.81	+1.3
1,870,385	-	fepD	MCAODC_09365	0.81	-1.7
1,870,385	-	fepD	MCAODC_09365	0.81	+0.7
1,870,394	+	fepD	MCAODC_09365	0.82	-0.5
1,870,420	+	fepD	MCAODC_09365	0.84	-1.9
1,870,453	+	fepD	MCAODC_09365	0.87	+0.4
1,870,470	-	fepD	MCAODC_09365	0.89	-1.8
1,870,470	-	fepD	MCAODC_09365	0.89	-0.0
1,870,552	+				-2.5
1,870,552	+				-0.4
1,870,553	-				-0.4
1,870,591	+				-0.5
1,870,591	+				-2.4
1,870,591	+				-2.2
1,870,591	+				-2.5
1,870,591	+				+1.2
1,870,592	-				+1.6
1,870,592	-				-0.2
1,870,592	-				-1.9
1,870,592	-				-0.8
1,870,592	-				-0.6
1,870,593	+				+1.1
1,870,593	+				-1.5
1,870,594	-				-0.3
1,870,619	+				+0.3
1,870,620	-				+1.8
1,870,620	-				-0.3
1,870,620	-				-3.6
1,870,666	-				-4.4
1,870,724	+	fepB	MCAODC_09370	0.14	+0.7
1,870,725	-	fepB	MCAODC_09370	0.14	+0.8
1,870,725	-	fepB	MCAODC_09370	0.14	+1.3
1,870,737	+	fepB	MCAODC_09370	0.15	-1.1
1,870,743	+	fepB	MCAODC_09370	0.16	+2.0
1,870,743	+	fepB	MCAODC_09370	0.16	+0.1
1,870,743	+	fepB	MCAODC_09370	0.16	+1.3
1,870,744	-	fepB	MCAODC_09370	0.16	-1.2
1,870,744	-	fepB	MCAODC_09370	0.16	-1.6
1,870,744	-	fepB	MCAODC_09370	0.16	-2.6
1,870,766	+	fepB	MCAODC_09370	0.18	-0.9
1,870,766	+	fepB	MCAODC_09370	0.18	-2.8
1,870,833	-	fepB	MCAODC_09370	0.25	-0.7
1,870,872	+	fepB	MCAODC_09370	0.29	-1.8
1,870,893	+	fepB	MCAODC_09370	0.32	+0.1
1,870,950	+	fepB	MCAODC_09370	0.38	+0.9
1,870,950	+	fepB	MCAODC_09370	0.38	+0.3
1,870,950	+	fepB	MCAODC_09370	0.38	-0.5
1,870,951	-	fepB	MCAODC_09370	0.38	-0.9
1,870,951	-	fepB	MCAODC_09370	0.38	-0.2
1,870,951	-	fepB	MCAODC_09370	0.38	+0.5
1,871,184	+	fepB	MCAODC_09370	0.62	+0.4
1,871,184	+	fepB	MCAODC_09370	0.62	-0.8
1,871,184	+	fepB	MCAODC_09370	0.62	+0.3
1,871,184	+	fepB	MCAODC_09370	0.62	-0.8
1,871,184	+	fepB	MCAODC_09370	0.62	+1.4
1,871,184	+	fepB	MCAODC_09370	0.62	+1.6
1,871,185	-	fepB	MCAODC_09370	0.62	+1.4
1,871,185	-	fepB	MCAODC_09370	0.62	-1.0
1,871,188	+	fepB	MCAODC_09370	0.63	-1.9
1,871,188	+	fepB	MCAODC_09370	0.63	+0.4
1,871,188	+	fepB	MCAODC_09370	0.63	-0.0
1,871,188	+	fepB	MCAODC_09370	0.63	-1.4
1,871,188	+	fepB	MCAODC_09370	0.63	+0.3
1,871,188	+	fepB	MCAODC_09370	0.63	-0.2
1,871,188	+	fepB	MCAODC_09370	0.63	-0.3
1,871,188	+	fepB	MCAODC_09370	0.63	+0.1
1,871,188	+	fepB	MCAODC_09370	0.63	+2.0
1,871,188	+	fepB	MCAODC_09370	0.63	+0.6
1,871,188	+	fepB	MCAODC_09370	0.63	+1.3
1,871,188	+	fepB	MCAODC_09370	0.63	+0.5
1,871,189	-	fepB	MCAODC_09370	0.63	-0.5
1,871,189	-	fepB	MCAODC_09370	0.63	+1.3
1,871,189	-	fepB	MCAODC_09370	0.63	+1.6
1,871,189	-	fepB	MCAODC_09370	0.63	+2.3
1,871,189	-	fepB	MCAODC_09370	0.63	-0.4
1,871,189	-	fepB	MCAODC_09370	0.63	-0.9
1,871,210	+	fepB	MCAODC_09370	0.65	+0.6
1,871,210	+	fepB	MCAODC_09370	0.65	-2.9
1,871,211	-	fepB	MCAODC_09370	0.65	-0.9
1,871,291	+	fepB	MCAODC_09370	0.74	+0.8
1,871,429	-	fepB	MCAODC_09370	0.88	+0.8
1,871,460	+				+0.3
1,871,498	+				-0.4
1,871,498	+				+0.5
1,871,499	-				-2.3
1,871,499	-				-1.4
1,871,567	+				-2.6
1,871,567	+				-1.3
1,871,567	+				-0.9
1,871,568	-				+0.2
1,871,571	+				+1.1
1,871,571	+				-2.0
1,871,571	+				-0.9
1,871,572	-				-2.0
1,871,572	-				+1.3
1,871,572	-				+0.3
1,871,605	+				+0.4
1,871,606	-				-1.9
1,871,634	+	rpiR	MCAODC_09375	0.11	-1.1
1,871,634	+	rpiR	MCAODC_09375	0.11	+0.7
1,871,635	-	rpiR	MCAODC_09375	0.11	+0.6
1,871,635	-	rpiR	MCAODC_09375	0.11	-3.3
1,871,637	-	rpiR	MCAODC_09375	0.11	+0.6
1,871,637	-	rpiR	MCAODC_09375	0.11	+0.2
1,871,637	-	rpiR	MCAODC_09375	0.11	-0.4
1,871,639	+	rpiR	MCAODC_09375	0.11	+0.5
1,871,717	+	rpiR	MCAODC_09375	0.20	-0.7
1,871,717	+	rpiR	MCAODC_09375	0.20	-0.4
1,871,727	-	rpiR	MCAODC_09375	0.21	+0.4
1,871,727	-	rpiR	MCAODC_09375	0.21	+1.4
1,871,728	+	rpiR	MCAODC_09375	0.21	+0.9
1,871,728	+	rpiR	MCAODC_09375	0.21	+1.5
1,871,729	-	rpiR	MCAODC_09375	0.22	-1.9
1,871,729	-	rpiR	MCAODC_09375	0.22	-1.4
1,871,798	+	rpiR	MCAODC_09375	0.29	+1.5
1,871,798	+	rpiR	MCAODC_09375	0.29	+0.4
1,871,799	-	rpiR	MCAODC_09375	0.29	-2.7
1,871,832	-	rpiR	MCAODC_09375	0.33	-1.9
1,871,849	+	rpiR	MCAODC_09375	0.35	+0.6
1,871,850	-	rpiR	MCAODC_09375	0.35	-0.2
1,871,886	+	rpiR	MCAODC_09375	0.39	-0.6
1,871,887	-	rpiR	MCAODC_09375	0.39	-0.7
1,871,887	-	rpiR	MCAODC_09375	0.39	-3.3
1,871,887	-	rpiR	MCAODC_09375	0.39	-0.2
1,871,888	+	rpiR	MCAODC_09375	0.39	-1.6
1,871,894	+	rpiR	MCAODC_09375	0.40	+0.1
1,871,953	+	rpiR	MCAODC_09375	0.47	+1.1
1,872,010	-	rpiR	MCAODC_09375	0.53	+0.2
1,872,010	-	rpiR	MCAODC_09375	0.53	+0.6
1,872,010	-	rpiR	MCAODC_09375	0.53	+0.7
1,872,010	-	rpiR	MCAODC_09375	0.53	-0.1
1,872,011	+	rpiR	MCAODC_09375	0.53	+0.7
1,872,022	+	rpiR	MCAODC_09375	0.55	-2.2
1,872,023	-	rpiR	MCAODC_09375	0.55	-0.3
1,872,034	+	rpiR	MCAODC_09375	0.56	+0.8
1,872,034	+	rpiR	MCAODC_09375	0.56	-0.5
1,872,035	-	rpiR	MCAODC_09375	0.56	-0.7
1,872,194	+	rpiR	MCAODC_09375	0.74	-1.4
1,872,195	-	rpiR	MCAODC_09375	0.74	-0.4
1,872,289	+	rpiR	MCAODC_09375	0.85	+1.2
1,872,289	+	rpiR	MCAODC_09375	0.85	-3.1
1,872,290	-	rpiR	MCAODC_09375	0.85	+1.2
1,872,290	-	rpiR	MCAODC_09375	0.85	-2.0
1,872,290	-	rpiR	MCAODC_09375	0.85	-0.3
1,872,296	+	rpiR	MCAODC_09375	0.85	-0.6
1,872,301	+	rpiR	MCAODC_09375	0.86	+0.5
1,872,301	+	rpiR	MCAODC_09375	0.86	-0.4
1,872,472	-				+0.4
1,872,490	+				-0.7
1,872,491	-				+0.3
1,872,497	-				+0.2
1,872,497	-				-0.5
1,872,497	-				+0.2
1,872,497	-				+0.4
1,872,522	-	ygiN	MCAODC_09380	0.17	+0.6
1,872,533	-	ygiN	MCAODC_09380	0.20	+0.6
1,872,534	+	ygiN	MCAODC_09380	0.20	-0.6
1,872,535	-	ygiN	MCAODC_09380	0.21	+0.9
1,872,535	-	ygiN	MCAODC_09380	0.21	+1.5
1,872,535	-	ygiN	MCAODC_09380	0.21	+0.2