Strain Fitness in Escherichia coli ECRC101 around MCAODC_09335

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,860,855	-	nudF	MCAODC_09325	0.15	-3.5
1,860,865	-	nudF	MCAODC_09325	0.16	-0.8
1,860,881	+	nudF	MCAODC_09325	0.19	+0.6
1,860,881	+	nudF	MCAODC_09325	0.19	-0.4
1,860,882	-	nudF	MCAODC_09325	0.19	+0.9
1,861,010	-	nudF	MCAODC_09325	0.39	-0.2
1,861,018	-	nudF	MCAODC_09325	0.40	-0.7
1,861,145	+	nudF	MCAODC_09325	0.61	-0.5
1,861,146	-	nudF	MCAODC_09325	0.61	-0.8
1,861,191	+	nudF	MCAODC_09325	0.68	-0.2
1,861,191	+	nudF	MCAODC_09325	0.68	-0.3
1,861,191	+	nudF	MCAODC_09325	0.68	+0.4
1,861,192	-	nudF	MCAODC_09325	0.68	-0.3
1,861,192	-	nudF	MCAODC_09325	0.68	+0.7
1,861,257	+	nudF	MCAODC_09325	0.78	-0.5
1,861,257	+	nudF	MCAODC_09325	0.78	-1.9
1,861,258	-	nudF	MCAODC_09325	0.79	-0.1
1,861,258	-	nudF	MCAODC_09325	0.79	-2.4
1,861,274	+	nudF	MCAODC_09325	0.81	+0.2
1,861,274	+	nudF	MCAODC_09325	0.81	-0.8
1,861,291	+	nudF	MCAODC_09325	0.84	-0.8
1,861,291	+	nudF	MCAODC_09325	0.84	-1.4
1,861,292	-	nudF	MCAODC_09325	0.84	-0.4
1,861,292	-	nudF	MCAODC_09325	0.84	-0.2
1,861,301	+	nudF	MCAODC_09325	0.85	+1.7
1,861,403	-				-0.9
1,861,403	-				-1.8
1,861,499	+	yqiB	MCAODC_09330	0.25	-0.8
1,861,500	-	yqiB	MCAODC_09330	0.25	+0.5
1,861,504	+	yqiB	MCAODC_09330	0.26	+0.6
1,861,505	-	yqiB	MCAODC_09330	0.26	+0.2
1,861,574	+	yqiB	MCAODC_09330	0.43	-0.2
1,861,575	-	yqiB	MCAODC_09330	0.43	+1.0
1,861,575	-	yqiB	MCAODC_09330	0.43	+1.2
1,861,600	+	yqiB	MCAODC_09330	0.49	+0.8
1,861,633	+	yqiB	MCAODC_09330	0.57	-1.5
1,861,634	-	yqiB	MCAODC_09330	0.57	+0.1
1,861,634	-	yqiB	MCAODC_09330	0.57	-0.4
1,861,707	+	yqiB	MCAODC_09330	0.74	-0.5
1,861,708	-	yqiB	MCAODC_09330	0.74	+0.9
1,861,711	-	yqiB	MCAODC_09330	0.75	+0.1
1,861,781	+				+0.5
1,861,810	+				-0.7
1,861,828	+				-1.8
1,861,828	+				+0.5
1,861,946	+	cpdA	MCAODC_09335	0.13	-4.2
1,861,946	+	cpdA	MCAODC_09335	0.13	+0.1
1,861,964	-	cpdA	MCAODC_09335	0.15	-1.2
1,862,033	+	cpdA	MCAODC_09335	0.23	-1.6
1,862,143	+	cpdA	MCAODC_09335	0.37	-0.7
1,862,144	-	cpdA	MCAODC_09335	0.37	-2.6
1,862,190	+	cpdA	MCAODC_09335	0.42	-0.6
1,862,255	+	cpdA	MCAODC_09335	0.50	-1.7
1,862,255	+	cpdA	MCAODC_09335	0.50	+1.1
1,862,255	+	cpdA	MCAODC_09335	0.50	-2.1
1,862,286	+	cpdA	MCAODC_09335	0.54	-2.5
1,862,286	+	cpdA	MCAODC_09335	0.54	+1.2
1,862,287	-	cpdA	MCAODC_09335	0.54	-0.1
1,862,313	+	cpdA	MCAODC_09335	0.57	+0.5
1,862,355	+	cpdA	MCAODC_09335	0.62	-2.4
1,862,355	+	cpdA	MCAODC_09335	0.62	-1.0
1,862,448	+	cpdA	MCAODC_09335	0.73	+0.2
1,862,448	+	cpdA	MCAODC_09335	0.73	-0.4
1,862,449	-	cpdA	MCAODC_09335	0.74	-2.1
1,862,521	-	cpdA	MCAODC_09335	0.82	-3.9
1,862,553	+	cpdA	MCAODC_09335	0.86	+0.1
1,862,582	+	cpdA	MCAODC_09335	0.90	-1.2
1,862,582	+	cpdA	MCAODC_09335	0.90	-0.9
1,862,672	+				-1.3
1,862,673	-				+0.5
1,862,682	+				+0.8
1,862,682	+				+0.5
1,862,683	-				+0.2
1,862,686	+				+0.3
1,862,686	+				-1.1
1,862,686	+				+0.1
1,862,687	-				-0.2
1,862,731	+	cpdA	MCAODC_09340	0.11	-0.9
1,862,794	-	cpdA	MCAODC_09340	0.22	-0.6
1,862,794	-	cpdA	MCAODC_09340	0.22	-3.7
1,862,887	-	cpdA	MCAODC_09340	0.38	-0.5
1,862,912	+	cpdA	MCAODC_09340	0.42	+1.1
1,863,009	+	cpdA	MCAODC_09340	0.59	-0.9
1,863,009	+	cpdA	MCAODC_09340	0.59	+1.4
1,863,009	+	cpdA	MCAODC_09340	0.59	-0.6
1,863,009	+	cpdA	MCAODC_09340	0.59	-1.1
1,863,009	+	cpdA	MCAODC_09340	0.59	-1.1
1,863,009	+	cpdA	MCAODC_09340	0.59	-1.1
1,863,009	+	cpdA	MCAODC_09340	0.59	-5.0
1,863,010	-	cpdA	MCAODC_09340	0.59	-2.9
1,863,010	-	cpdA	MCAODC_09340	0.59	+0.2
1,863,010	-	cpdA	MCAODC_09340	0.59	-0.3
1,863,010	-	cpdA	MCAODC_09340	0.59	+0.6
1,863,010	-	cpdA	MCAODC_09340	0.59	+1.0
1,863,010	-	cpdA	MCAODC_09340	0.59	+0.1
1,863,010	-	cpdA	MCAODC_09340	0.59	+0.0
1,863,010	-	cpdA	MCAODC_09340	0.59	+0.3
1,863,016	+	cpdA	MCAODC_09340	0.60	+0.5
1,863,029	+	cpdA	MCAODC_09340	0.62	-0.1
1,863,033	+	cpdA	MCAODC_09340	0.63	-0.2
1,863,041	+	cpdA	MCAODC_09340	0.64	-0.7
1,863,041	+	cpdA	MCAODC_09340	0.64	-1.3
1,863,041	+	cpdA	MCAODC_09340	0.64	+0.5
1,863,138	+	cpdA	MCAODC_09340	0.81	-0.7
1,863,141	+	cpdA	MCAODC_09340	0.81	-0.7
1,863,141	+	cpdA	MCAODC_09340	0.81	+0.9
1,863,141	+	cpdA	MCAODC_09340	0.81	-0.2
1,863,141	+	cpdA	MCAODC_09340	0.81	-0.5
1,863,166	+	cpdA	MCAODC_09340	0.86	+0.7
1,863,166	+	cpdA	MCAODC_09340	0.86	-0.5
1,863,166	+	cpdA	MCAODC_09340	0.86	+1.7
1,863,166	+	cpdA	MCAODC_09340	0.86	+1.8
1,863,166	+	cpdA	MCAODC_09340	0.86	+1.5
1,863,166	+	cpdA	MCAODC_09340	0.86	+0.9
1,863,166	+	cpdA	MCAODC_09340	0.86	-4.0
1,863,166	+	cpdA	MCAODC_09340	0.86	+0.3
1,863,266	+				+0.8