Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhdP and tldD are separated by 155 nucleotides tldD and aaeR are separated by 133 nucleotides
MCAODC_08270: yhdP - AsmA2 domain-containing protein YhdP, at 1,654,977 to 1,658,777
yhdP
MCAODC_08275: tldD - metalloprotease TldD, at 1,658,933 to 1,660,378
tldD
MCAODC_08280: aaeR - HTH-type transcriptional activator AaeR, at 1,660,512 to 1,661,441
aaeR
Position (kb) 1658
1659
1660
1661 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1657.966 kb on + strand, within yhdP at 1657.966 kb on + strand, within yhdP at 1658.021 kb on + strand, within yhdP at 1658.021 kb on + strand, within yhdP at 1658.021 kb on + strand, within yhdP at 1658.022 kb on - strand, within yhdP at 1658.040 kb on - strand, within yhdP at 1658.045 kb on - strand, within yhdP at 1658.070 kb on - strand, within yhdP at 1658.129 kb on + strand, within yhdP at 1658.129 kb on + strand, within yhdP at 1658.219 kb on + strand, within yhdP at 1658.219 kb on + strand, within yhdP at 1658.219 kb on + strand, within yhdP at 1658.220 kb on - strand, within yhdP at 1658.236 kb on + strand, within yhdP at 1658.236 kb on + strand, within yhdP at 1658.236 kb on + strand, within yhdP at 1658.246 kb on + strand, within yhdP at 1658.294 kb on + strand, within yhdP at 1658.294 kb on + strand, within yhdP at 1658.295 kb on - strand, within yhdP at 1658.295 kb on - strand, within yhdP at 1658.307 kb on - strand, within yhdP at 1658.368 kb on + strand, within yhdP at 1658.368 kb on + strand, within yhdP at 1658.368 kb on + strand, within yhdP at 1658.369 kb on - strand, within yhdP at 1658.369 kb on - strand, within yhdP at 1658.369 kb on - strand, within yhdP at 1658.369 kb on - strand, within yhdP at 1658.369 kb on - strand, within yhdP at 1658.369 kb on - strand, within yhdP at 1658.384 kb on + strand, within yhdP at 1658.459 kb on + strand at 1658.542 kb on + strand at 1658.543 kb on - strand at 1658.815 kb on + strand at 1658.847 kb on + strand at 1658.848 kb on - strand at 1658.848 kb on - strand at 1658.854 kb on - strand at 1658.903 kb on + strand at 1658.904 kb on - strand at 1658.915 kb on + strand at 1658.916 kb on - strand at 1658.916 kb on - strand at 1658.916 kb on - strand at 1658.949 kb on + strand at 1658.950 kb on - strand at 1659.048 kb on - strand at 1659.048 kb on - strand at 1659.048 kb on - strand at 1659.081 kb on + strand, within tldD at 1659.082 kb on - strand, within tldD at 1659.097 kb on + strand, within tldD at 1659.098 kb on - strand, within tldD at 1659.098 kb on - strand, within tldD at 1659.110 kb on + strand, within tldD at 1659.110 kb on + strand, within tldD at 1659.110 kb on + strand, within tldD at 1659.110 kb on + strand, within tldD at 1659.110 kb on + strand, within tldD at 1659.110 kb on + strand, within tldD at 1659.111 kb on - strand, within tldD at 1659.111 kb on - strand, within tldD at 1659.111 kb on - strand, within tldD at 1659.239 kb on - strand, within tldD at 1659.256 kb on - strand, within tldD at 1659.281 kb on - strand, within tldD at 1659.290 kb on + strand, within tldD at 1659.290 kb on + strand, within tldD at 1659.290 kb on + strand, within tldD at 1659.291 kb on - strand, within tldD at 1659.293 kb on - strand, within tldD at 1659.293 kb on - strand, within tldD at 1659.293 kb on - strand, within tldD at 1659.293 kb on - strand, within tldD at 1659.300 kb on + strand, within tldD at 1659.301 kb on - strand, within tldD at 1659.427 kb on - strand, within tldD at 1659.560 kb on + strand, within tldD at 1659.561 kb on - strand, within tldD at 1659.624 kb on + strand, within tldD at 1659.624 kb on + strand, within tldD at 1659.625 kb on - strand, within tldD at 1659.625 kb on - strand, within tldD at 1659.625 kb on - strand, within tldD at 1659.625 kb on - strand, within tldD at 1659.625 kb on - strand, within tldD at 1659.629 kb on - strand, within tldD at 1659.684 kb on + strand, within tldD at 1659.684 kb on + strand, within tldD at 1659.684 kb on + strand, within tldD at 1659.685 kb on - strand, within tldD at 1659.727 kb on - strand, within tldD at 1659.772 kb on - strand, within tldD at 1659.772 kb on - strand, within tldD at 1659.775 kb on + strand, within tldD at 1659.814 kb on + strand, within tldD at 1659.832 kb on + strand, within tldD at 1659.927 kb on - strand, within tldD at 1659.995 kb on + strand, within tldD at 1659.996 kb on - strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.031 kb on + strand, within tldD at 1660.032 kb on - strand, within tldD at 1660.032 kb on - strand, within tldD at 1660.032 kb on - strand, within tldD at 1660.032 kb on - strand, within tldD at 1660.032 kb on - strand, within tldD at 1660.032 kb on - strand, within tldD at 1660.033 kb on + strand, within tldD at 1660.033 kb on + strand, within tldD at 1660.033 kb on + strand, within tldD at 1660.034 kb on - strand, within tldD at 1660.034 kb on - strand, within tldD at 1660.034 kb on - strand, within tldD at 1660.034 kb on - strand, within tldD at 1660.087 kb on + strand, within tldD at 1660.088 kb on - strand, within tldD at 1660.088 kb on - strand, within tldD at 1660.091 kb on + strand, within tldD at 1660.091 kb on + strand, within tldD at 1660.091 kb on + strand, within tldD at 1660.091 kb on + strand, within tldD at 1660.091 kb on + strand, within tldD at 1660.092 kb on - strand, within tldD at 1660.092 kb on - strand, within tldD at 1660.092 kb on - strand, within tldD at 1660.092 kb on - strand, within tldD at 1660.092 kb on - strand, within tldD at 1660.092 kb on - strand, within tldD at 1660.164 kb on - strand, within tldD at 1660.164 kb on - strand, within tldD at 1660.164 kb on - strand, within tldD at 1660.186 kb on - strand, within tldD at 1660.186 kb on - strand, within tldD at 1660.186 kb on - strand, within tldD at 1660.377 kb on - strand at 1660.407 kb on - strand at 1660.457 kb on - strand at 1660.457 kb on - strand at 1660.489 kb on - strand at 1660.489 kb on - strand at 1660.495 kb on + strand at 1660.495 kb on + strand at 1660.495 kb on + strand at 1660.495 kb on + strand at 1660.496 kb on - strand at 1660.501 kb on + strand at 1660.501 kb on + strand at 1660.502 kb on - strand at 1660.502 kb on - strand at 1660.502 kb on - strand at 1660.507 kb on - strand at 1660.507 kb on - strand at 1660.507 kb on - strand at 1660.513 kb on + strand at 1660.513 kb on + strand at 1660.514 kb on - strand at 1660.514 kb on - strand at 1660.553 kb on + strand at 1660.554 kb on - strand at 1660.570 kb on + strand at 1660.599 kb on + strand at 1660.600 kb on - strand at 1660.600 kb on - strand at 1660.630 kb on + strand, within aaeR at 1660.630 kb on + strand, within aaeR at 1660.631 kb on - strand, within aaeR at 1660.631 kb on - strand, within aaeR at 1660.631 kb on - strand, within aaeR at 1660.631 kb on - strand, within aaeR at 1660.632 kb on + strand, within aaeR at 1660.632 kb on + strand, within aaeR at 1660.632 kb on + strand, within aaeR at 1660.632 kb on + strand, within aaeR at 1660.632 kb on + strand, within aaeR at 1660.632 kb on + strand, within aaeR at 1660.633 kb on - strand, within aaeR at 1660.633 kb on - strand, within aaeR at 1660.633 kb on - strand, within aaeR at 1660.633 kb on - strand, within aaeR at 1660.633 kb on - strand, within aaeR at 1660.729 kb on + strand, within aaeR at 1660.781 kb on + strand, within aaeR at 1660.867 kb on + strand, within aaeR at 1660.867 kb on + strand, within aaeR at 1660.886 kb on + strand, within aaeR at 1660.887 kb on - strand, within aaeR at 1660.890 kb on + strand, within aaeR at 1660.890 kb on + strand, within aaeR at 1660.891 kb on - strand, within aaeR at 1660.930 kb on + strand, within aaeR at 1660.931 kb on - strand, within aaeR at 1661.139 kb on - strand, within aaeR at 1661.139 kb on - strand, within aaeR at 1661.139 kb on - strand, within aaeR at 1661.180 kb on + strand, within aaeR at 1661.191 kb on + strand, within aaeR at 1661.191 kb on + strand, within aaeR at 1661.192 kb on - strand, within aaeR at 1661.192 kb on - strand, within aaeR at 1661.192 kb on - strand, within aaeR at 1661.228 kb on + strand, within aaeR at 1661.228 kb on + strand, within aaeR at 1661.228 kb on + strand, within aaeR at 1661.229 kb on - strand, within aaeR at 1661.229 kb on - strand, within aaeR at 1661.229 kb on - strand, within aaeR at 1661.245 kb on + strand, within aaeR at 1661.248 kb on + strand, within aaeR at 1661.295 kb on + strand, within aaeR at 1661.295 kb on + strand, within aaeR at 1661.304 kb on + strand, within aaeR at 1661.364 kb on + strand at 1661.364 kb on + strand at 1661.365 kb on - strand at 1661.365 kb on - strand at 1661.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,657,966 + yhdP MCAODC_08270 0.79 +0.9 1,657,966 + yhdP MCAODC_08270 0.79 +1.1 1,658,021 + yhdP MCAODC_08270 0.80 +0.3 1,658,021 + yhdP MCAODC_08270 0.80 -1.9 1,658,021 + yhdP MCAODC_08270 0.80 -0.3 1,658,022 - yhdP MCAODC_08270 0.80 +0.0 1,658,040 - yhdP MCAODC_08270 0.81 -1.0 1,658,045 - yhdP MCAODC_08270 0.81 -2.3 1,658,070 - yhdP MCAODC_08270 0.81 +0.3 1,658,129 + yhdP MCAODC_08270 0.83 -0.2 1,658,129 + yhdP MCAODC_08270 0.83 -0.1 1,658,219 + yhdP MCAODC_08270 0.85 +0.8 1,658,219 + yhdP MCAODC_08270 0.85 -0.3 1,658,219 + yhdP MCAODC_08270 0.85 -2.1 1,658,220 - yhdP MCAODC_08270 0.85 +0.1 1,658,236 + yhdP MCAODC_08270 0.86 -0.2 1,658,236 + yhdP MCAODC_08270 0.86 -1.7 1,658,236 + yhdP MCAODC_08270 0.86 -0.2 1,658,246 + yhdP MCAODC_08270 0.86 +0.9 1,658,294 + yhdP MCAODC_08270 0.87 +1.0 1,658,294 + yhdP MCAODC_08270 0.87 +0.5 1,658,295 - yhdP MCAODC_08270 0.87 -0.3 1,658,295 - yhdP MCAODC_08270 0.87 +0.9 1,658,307 - yhdP MCAODC_08270 0.88 -0.2 1,658,368 + yhdP MCAODC_08270 0.89 -2.1 1,658,368 + yhdP MCAODC_08270 0.89 -1.8 1,658,368 + yhdP MCAODC_08270 0.89 -2.6 1,658,369 - yhdP MCAODC_08270 0.89 -0.2 1,658,369 - yhdP MCAODC_08270 0.89 +0.1 1,658,369 - yhdP MCAODC_08270 0.89 +1.2 1,658,369 - yhdP MCAODC_08270 0.89 +0.7 1,658,369 - yhdP MCAODC_08270 0.89 +0.2 1,658,369 - yhdP MCAODC_08270 0.89 -2.9 1,658,384 + yhdP MCAODC_08270 0.90 -0.5 1,658,459 + +0.9 1,658,542 + +0.1 1,658,543 - +1.3 1,658,815 + -0.5 1,658,847 + -0.2 1,658,848 - -3.6 1,658,848 - -1.6 1,658,854 - +0.4 1,658,903 + -0.4 1,658,904 - +0.9 1,658,915 + +0.6 1,658,916 - -0.6 1,658,916 - -0.4 1,658,916 - -0.6 1,658,949 + -2.3 1,658,950 - -1.6 1,659,048 - +0.6 1,659,048 - -0.3 1,659,048 - +1.2 1,659,081 + tldD MCAODC_08275 0.10 +2.9 1,659,082 - tldD MCAODC_08275 0.10 -3.8 1,659,097 + tldD MCAODC_08275 0.11 -0.6 1,659,098 - tldD MCAODC_08275 0.11 -0.9 1,659,098 - tldD MCAODC_08275 0.11 -0.1 1,659,110 + tldD MCAODC_08275 0.12 -1.0 1,659,110 + tldD MCAODC_08275 0.12 -2.6 1,659,110 + tldD MCAODC_08275 0.12 -0.1 1,659,110 + tldD MCAODC_08275 0.12 -0.1 1,659,110 + tldD MCAODC_08275 0.12 -0.4 1,659,110 + tldD MCAODC_08275 0.12 -0.2 1,659,111 - tldD MCAODC_08275 0.12 +0.6 1,659,111 - tldD MCAODC_08275 0.12 -1.2 1,659,111 - tldD MCAODC_08275 0.12 -1.2 1,659,239 - tldD MCAODC_08275 0.21 -0.3 1,659,256 - tldD MCAODC_08275 0.22 -3.1 1,659,281 - tldD MCAODC_08275 0.24 +0.5 1,659,290 + tldD MCAODC_08275 0.25 -0.1 1,659,290 + tldD MCAODC_08275 0.25 -0.3 1,659,290 + tldD MCAODC_08275 0.25 +0.3 1,659,291 - tldD MCAODC_08275 0.25 +0.2 1,659,293 - tldD MCAODC_08275 0.25 -0.3 1,659,293 - tldD MCAODC_08275 0.25 -0.7 1,659,293 - tldD MCAODC_08275 0.25 +0.3 1,659,293 - tldD MCAODC_08275 0.25 +0.1 1,659,300 + tldD MCAODC_08275 0.25 +1.2 1,659,301 - tldD MCAODC_08275 0.25 +0.3 1,659,427 - tldD MCAODC_08275 0.34 -0.5 1,659,560 + tldD MCAODC_08275 0.43 +0.2 1,659,561 - tldD MCAODC_08275 0.43 -2.8 1,659,624 + tldD MCAODC_08275 0.48 -3.1 1,659,624 + tldD MCAODC_08275 0.48 -1.3 1,659,625 - tldD MCAODC_08275 0.48 -0.0 1,659,625 - tldD MCAODC_08275 0.48 +1.4 1,659,625 - tldD MCAODC_08275 0.48 +0.1 1,659,625 - tldD MCAODC_08275 0.48 +0.6 1,659,625 - tldD MCAODC_08275 0.48 -0.6 1,659,629 - tldD MCAODC_08275 0.48 +0.1 1,659,684 + tldD MCAODC_08275 0.52 +1.9 1,659,684 + tldD MCAODC_08275 0.52 +0.5 1,659,684 + tldD MCAODC_08275 0.52 -0.8 1,659,685 - tldD MCAODC_08275 0.52 -0.3 1,659,727 - tldD MCAODC_08275 0.55 +1.4 1,659,772 - tldD MCAODC_08275 0.58 +0.5 1,659,772 - tldD MCAODC_08275 0.58 -1.3 1,659,775 + tldD MCAODC_08275 0.58 -1.0 1,659,814 + tldD MCAODC_08275 0.61 +0.7 1,659,832 + tldD MCAODC_08275 0.62 +0.7 1,659,927 - tldD MCAODC_08275 0.69 -0.1 1,659,995 + tldD MCAODC_08275 0.73 -1.7 1,659,996 - tldD MCAODC_08275 0.74 +0.5 1,660,031 + tldD MCAODC_08275 0.76 +0.7 1,660,031 + tldD MCAODC_08275 0.76 -1.0 1,660,031 + tldD MCAODC_08275 0.76 +0.5 1,660,031 + tldD MCAODC_08275 0.76 -1.0 1,660,031 + tldD MCAODC_08275 0.76 -1.5 1,660,031 + tldD MCAODC_08275 0.76 +0.4 1,660,031 + tldD MCAODC_08275 0.76 +0.4 1,660,031 + tldD MCAODC_08275 0.76 -0.3 1,660,031 + tldD MCAODC_08275 0.76 +0.9 1,660,031 + tldD MCAODC_08275 0.76 +1.2 1,660,031 + tldD MCAODC_08275 0.76 -0.5 1,660,032 - tldD MCAODC_08275 0.76 +0.1 1,660,032 - tldD MCAODC_08275 0.76 +1.0 1,660,032 - tldD MCAODC_08275 0.76 -1.6 1,660,032 - tldD MCAODC_08275 0.76 +1.5 1,660,032 - tldD MCAODC_08275 0.76 -2.1 1,660,032 - tldD MCAODC_08275 0.76 +1.1 1,660,033 + tldD MCAODC_08275 0.76 -2.0 1,660,033 + tldD MCAODC_08275 0.76 +0.0 1,660,033 + tldD MCAODC_08275 0.76 -0.9 1,660,034 - tldD MCAODC_08275 0.76 +0.7 1,660,034 - tldD MCAODC_08275 0.76 +0.9 1,660,034 - tldD MCAODC_08275 0.76 -0.6 1,660,034 - tldD MCAODC_08275 0.76 -2.8 1,660,087 + tldD MCAODC_08275 0.80 +0.1 1,660,088 - tldD MCAODC_08275 0.80 +0.2 1,660,088 - tldD MCAODC_08275 0.80 +0.6 1,660,091 + tldD MCAODC_08275 0.80 -3.4 1,660,091 + tldD MCAODC_08275 0.80 +0.5 1,660,091 + tldD MCAODC_08275 0.80 -1.5 1,660,091 + tldD MCAODC_08275 0.80 +0.2 1,660,091 + tldD MCAODC_08275 0.80 +0.3 1,660,092 - tldD MCAODC_08275 0.80 -3.0 1,660,092 - tldD MCAODC_08275 0.80 +0.9 1,660,092 - tldD MCAODC_08275 0.80 +0.3 1,660,092 - tldD MCAODC_08275 0.80 -1.0 1,660,092 - tldD MCAODC_08275 0.80 -0.3 1,660,092 - tldD MCAODC_08275 0.80 -0.8 1,660,164 - tldD MCAODC_08275 0.85 -1.2 1,660,164 - tldD MCAODC_08275 0.85 +1.4 1,660,164 - tldD MCAODC_08275 0.85 -1.4 1,660,186 - tldD MCAODC_08275 0.87 +0.6 1,660,186 - tldD MCAODC_08275 0.87 +0.8 1,660,186 - tldD MCAODC_08275 0.87 -0.5 1,660,377 - -1.4 1,660,407 - -1.0 1,660,457 - +1.0 1,660,457 - -0.2 1,660,489 - -0.3 1,660,489 - -1.1 1,660,495 + -1.1 1,660,495 + +0.8 1,660,495 + +1.0 1,660,495 + +0.3 1,660,496 - +0.8 1,660,501 + +2.6 1,660,501 + +0.8 1,660,502 - -0.0 1,660,502 - -0.6 1,660,502 - +0.2 1,660,507 - -1.7 1,660,507 - +0.6 1,660,507 - +1.4 1,660,513 + -2.7 1,660,513 + -0.7 1,660,514 - +0.1 1,660,514 - +0.8 1,660,553 + -0.3 1,660,554 - +1.0 1,660,570 + +0.1 1,660,599 + +0.1 1,660,600 - -1.4 1,660,600 - +0.1 1,660,630 + aaeR MCAODC_08280 0.13 +0.7 1,660,630 + aaeR MCAODC_08280 0.13 -3.3 1,660,631 - aaeR MCAODC_08280 0.13 -0.2 1,660,631 - aaeR MCAODC_08280 0.13 -0.1 1,660,631 - aaeR MCAODC_08280 0.13 +1.0 1,660,631 - aaeR MCAODC_08280 0.13 +0.2 1,660,632 + aaeR MCAODC_08280 0.13 +0.7 1,660,632 + aaeR MCAODC_08280 0.13 +1.9 1,660,632 + aaeR MCAODC_08280 0.13 +0.1 1,660,632 + aaeR MCAODC_08280 0.13 +1.2 1,660,632 + aaeR MCAODC_08280 0.13 +1.9 1,660,632 + aaeR MCAODC_08280 0.13 -0.1 1,660,633 - aaeR MCAODC_08280 0.13 -1.7 1,660,633 - aaeR MCAODC_08280 0.13 +1.4 1,660,633 - aaeR MCAODC_08280 0.13 -2.6 1,660,633 - aaeR MCAODC_08280 0.13 -0.6 1,660,633 - aaeR MCAODC_08280 0.13 -0.3 1,660,729 + aaeR MCAODC_08280 0.23 -0.3 1,660,781 + aaeR MCAODC_08280 0.29 +1.8 1,660,867 + aaeR MCAODC_08280 0.38 -1.1 1,660,867 + aaeR MCAODC_08280 0.38 -1.9 1,660,886 + aaeR MCAODC_08280 0.40 -0.9 1,660,887 - aaeR MCAODC_08280 0.40 +1.5 1,660,890 + aaeR MCAODC_08280 0.41 +0.2 1,660,890 + aaeR MCAODC_08280 0.41 -1.4 1,660,891 - aaeR MCAODC_08280 0.41 +1.4 1,660,930 + aaeR MCAODC_08280 0.45 +0.5 1,660,931 - aaeR MCAODC_08280 0.45 -0.9 1,661,139 - aaeR MCAODC_08280 0.67 +1.9 1,661,139 - aaeR MCAODC_08280 0.67 -2.9 1,661,139 - aaeR MCAODC_08280 0.67 +0.9 1,661,180 + aaeR MCAODC_08280 0.72 +3.5 1,661,191 + aaeR MCAODC_08280 0.73 -2.4 1,661,191 + aaeR MCAODC_08280 0.73 -0.1 1,661,192 - aaeR MCAODC_08280 0.73 -1.5 1,661,192 - aaeR MCAODC_08280 0.73 -1.3 1,661,192 - aaeR MCAODC_08280 0.73 -0.3 1,661,228 + aaeR MCAODC_08280 0.77 +0.5 1,661,228 + aaeR MCAODC_08280 0.77 +1.6 1,661,228 + aaeR MCAODC_08280 0.77 -0.5 1,661,229 - aaeR MCAODC_08280 0.77 +0.5 1,661,229 - aaeR MCAODC_08280 0.77 +0.7 1,661,229 - aaeR MCAODC_08280 0.77 -1.1 1,661,245 + aaeR MCAODC_08280 0.79 +0.3 1,661,248 + aaeR MCAODC_08280 0.79 +0.8 1,661,295 + aaeR MCAODC_08280 0.84 -2.1 1,661,295 + aaeR MCAODC_08280 0.84 +0.4 1,661,304 + aaeR MCAODC_08280 0.85 +0.7 1,661,364 + +0.1 1,661,364 + +0.1 1,661,365 - -1.2 1,661,365 - -2.2 1,661,365 - +0.9
Or see this region's nucleotide sequence