Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt menA and rraA are separated by 92 nucleotides rraA and MCAODC_04255 are separated by 59 nucleotides MCAODC_04255 and MCAODC_04260 are separated by 122 nucleotides
MCAODC_04245: menA - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 864,311 to 865,237
menA
MCAODC_04250: rraA - ribonuclease E activity regulator RraA, at 865,330 to 865,815
rraA
MCAODC_04255: MCAODC_04255 - hypothetical protein, at 865,875 to 866,549
_04255
MCAODC_04260: MCAODC_04260 - hypothetical protein, at 866,672 to 867,298
_04260
Position (kb) 865
866 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 864.365 kb on - strand at 864.394 kb on + strand at 864.394 kb on + strand at 864.464 kb on - strand, within menA at 864.477 kb on + strand, within menA at 864.478 kb on - strand, within menA at 864.478 kb on - strand, within menA at 864.478 kb on - strand, within menA at 864.490 kb on + strand, within menA at 864.520 kb on - strand, within menA at 864.610 kb on + strand, within menA at 864.610 kb on + strand, within menA at 864.610 kb on + strand, within menA at 864.611 kb on - strand, within menA at 864.611 kb on - strand, within menA at 864.731 kb on + strand, within menA at 864.731 kb on + strand, within menA at 864.732 kb on - strand, within menA at 864.752 kb on + strand, within menA at 864.752 kb on + strand, within menA at 864.758 kb on + strand, within menA at 864.758 kb on + strand, within menA at 864.759 kb on - strand, within menA at 864.759 kb on - strand, within menA at 864.828 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.907 kb on + strand, within menA at 864.907 kb on + strand, within menA at 864.908 kb on - strand, within menA at 864.969 kb on + strand, within menA at 864.970 kb on - strand, within menA at 865.024 kb on - strand, within menA at 865.039 kb on + strand, within menA at 865.040 kb on - strand, within menA at 865.116 kb on - strand, within menA at 865.189 kb on + strand at 865.207 kb on - strand at 865.235 kb on + strand at 865.236 kb on - strand at 865.253 kb on + strand at 865.284 kb on + strand at 865.294 kb on + strand at 865.323 kb on + strand at 865.324 kb on - strand at 865.324 kb on - strand at 865.324 kb on - strand at 865.324 kb on - strand at 865.324 kb on - strand at 865.336 kb on + strand at 865.337 kb on - strand at 865.363 kb on + strand at 865.363 kb on + strand at 865.363 kb on + strand at 865.437 kb on - strand, within rraA at 865.437 kb on - strand, within rraA at 865.437 kb on - strand, within rraA at 865.437 kb on - strand, within rraA at 865.437 kb on - strand, within rraA at 865.474 kb on + strand, within rraA at 865.607 kb on - strand, within rraA at 865.626 kb on - strand, within rraA at 865.737 kb on + strand, within rraA at 865.738 kb on - strand, within rraA at 865.738 kb on - strand, within rraA at 865.813 kb on + strand at 865.814 kb on - strand at 865.818 kb on - strand at 865.909 kb on + strand at 865.990 kb on + strand, within MCAODC_04255 at 866.018 kb on + strand, within MCAODC_04255 at 866.019 kb on - strand, within MCAODC_04255 at 866.101 kb on + strand, within MCAODC_04255 at 866.109 kb on - strand, within MCAODC_04255 at 866.109 kb on - strand, within MCAODC_04255 at 866.114 kb on + strand, within MCAODC_04255 at 866.121 kb on + strand, within MCAODC_04255 at 866.121 kb on + strand, within MCAODC_04255 at 866.122 kb on - strand, within MCAODC_04255 at 866.123 kb on + strand, within MCAODC_04255 at 866.123 kb on + strand, within MCAODC_04255 at 866.155 kb on - strand, within MCAODC_04255 at 866.157 kb on - strand, within MCAODC_04255 at 866.175 kb on - strand, within MCAODC_04255 at 866.215 kb on + strand, within MCAODC_04255 at 866.215 kb on + strand, within MCAODC_04255 at 866.218 kb on + strand, within MCAODC_04255 at 866.258 kb on + strand, within MCAODC_04255 at 866.258 kb on + strand, within MCAODC_04255 at 866.263 kb on + strand, within MCAODC_04255 at 866.264 kb on - strand, within MCAODC_04255 at 866.268 kb on - strand, within MCAODC_04255 at 866.268 kb on - strand, within MCAODC_04255 at 866.318 kb on + strand, within MCAODC_04255 at 866.420 kb on - strand, within MCAODC_04255 at 866.429 kb on + strand, within MCAODC_04255 at 866.518 kb on + strand at 866.518 kb on + strand at 866.567 kb on + strand at 866.571 kb on - strand at 866.589 kb on - strand at 866.593 kb on + strand at 866.594 kb on - strand at 866.605 kb on - strand at 866.605 kb on - strand at 866.608 kb on - strand at 866.629 kb on + strand at 866.648 kb on - strand at 866.657 kb on - strand at 866.697 kb on + strand at 866.698 kb on - strand at 866.737 kb on + strand, within MCAODC_04260 at 866.738 kb on - strand, within MCAODC_04260 at 866.782 kb on + strand, within MCAODC_04260 at 866.782 kb on + strand, within MCAODC_04260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 864,365 - +1.3 864,394 + +0.5 864,394 + +0.4 864,464 - menA MCAODC_04245 0.17 +1.6 864,477 + menA MCAODC_04245 0.18 +1.2 864,478 - menA MCAODC_04245 0.18 -0.6 864,478 - menA MCAODC_04245 0.18 +0.9 864,478 - menA MCAODC_04245 0.18 +0.6 864,490 + menA MCAODC_04245 0.19 -0.2 864,520 - menA MCAODC_04245 0.23 -0.7 864,610 + menA MCAODC_04245 0.32 +0.6 864,610 + menA MCAODC_04245 0.32 -2.2 864,610 + menA MCAODC_04245 0.32 +0.5 864,611 - menA MCAODC_04245 0.32 +1.1 864,611 - menA MCAODC_04245 0.32 -0.4 864,731 + menA MCAODC_04245 0.45 +2.5 864,731 + menA MCAODC_04245 0.45 -2.6 864,732 - menA MCAODC_04245 0.45 +0.1 864,752 + menA MCAODC_04245 0.48 +2.1 864,752 + menA MCAODC_04245 0.48 -2.1 864,758 + menA MCAODC_04245 0.48 -1.5 864,758 + menA MCAODC_04245 0.48 +1.3 864,759 - menA MCAODC_04245 0.48 +0.1 864,759 - menA MCAODC_04245 0.48 +0.3 864,828 + menA MCAODC_04245 0.56 +1.5 864,838 + menA MCAODC_04245 0.57 +0.8 864,838 + menA MCAODC_04245 0.57 -0.2 864,838 + menA MCAODC_04245 0.57 -0.0 864,838 + menA MCAODC_04245 0.57 +1.0 864,838 + menA MCAODC_04245 0.57 +1.3 864,839 - menA MCAODC_04245 0.57 +0.3 864,839 - menA MCAODC_04245 0.57 -1.1 864,839 - menA MCAODC_04245 0.57 +0.3 864,839 - menA MCAODC_04245 0.57 +0.0 864,839 - menA MCAODC_04245 0.57 +1.1 864,907 + menA MCAODC_04245 0.64 +0.8 864,907 + menA MCAODC_04245 0.64 -0.4 864,908 - menA MCAODC_04245 0.64 +2.1 864,969 + menA MCAODC_04245 0.71 -1.3 864,970 - menA MCAODC_04245 0.71 -0.9 865,024 - menA MCAODC_04245 0.77 -1.2 865,039 + menA MCAODC_04245 0.79 -1.1 865,040 - menA MCAODC_04245 0.79 +0.8 865,116 - menA MCAODC_04245 0.87 +0.2 865,189 + +0.2 865,207 - +0.8 865,235 + +1.1 865,236 - +1.1 865,253 + -0.3 865,284 + -0.7 865,294 + -2.7 865,323 + -1.5 865,324 - +0.2 865,324 - +1.3 865,324 - -2.5 865,324 - -2.7 865,324 - -1.4 865,336 + -0.2 865,337 - +0.4 865,363 + +1.2 865,363 + -1.7 865,363 + +0.0 865,437 - rraA MCAODC_04250 0.22 -0.2 865,437 - rraA MCAODC_04250 0.22 -0.3 865,437 - rraA MCAODC_04250 0.22 -1.7 865,437 - rraA MCAODC_04250 0.22 -2.4 865,437 - rraA MCAODC_04250 0.22 +1.3 865,474 + rraA MCAODC_04250 0.30 -0.7 865,607 - rraA MCAODC_04250 0.57 -3.9 865,626 - rraA MCAODC_04250 0.61 -0.3 865,737 + rraA MCAODC_04250 0.84 -1.8 865,738 - rraA MCAODC_04250 0.84 -0.5 865,738 - rraA MCAODC_04250 0.84 +1.4 865,813 + -1.2 865,814 - +1.8 865,818 - -0.2 865,909 + +0.6 865,990 + MCAODC_04255 0.17 -1.5 866,018 + MCAODC_04255 0.21 -2.4 866,019 - MCAODC_04255 0.21 +1.2 866,101 + MCAODC_04255 0.33 +0.5 866,109 - MCAODC_04255 0.35 +0.3 866,109 - MCAODC_04255 0.35 +0.7 866,114 + MCAODC_04255 0.35 +0.6 866,121 + MCAODC_04255 0.36 +0.4 866,121 + MCAODC_04255 0.36 +0.4 866,122 - MCAODC_04255 0.37 +0.2 866,123 + MCAODC_04255 0.37 +1.3 866,123 + MCAODC_04255 0.37 +0.0 866,155 - MCAODC_04255 0.41 -2.0 866,157 - MCAODC_04255 0.42 -3.0 866,175 - MCAODC_04255 0.44 +0.1 866,215 + MCAODC_04255 0.50 +1.0 866,215 + MCAODC_04255 0.50 +0.1 866,218 + MCAODC_04255 0.51 -2.7 866,258 + MCAODC_04255 0.57 -3.4 866,258 + MCAODC_04255 0.57 -1.7 866,263 + MCAODC_04255 0.57 +2.7 866,264 - MCAODC_04255 0.58 -1.0 866,268 - MCAODC_04255 0.58 +0.1 866,268 - MCAODC_04255 0.58 +0.1 866,318 + MCAODC_04255 0.66 -0.3 866,420 - MCAODC_04255 0.81 -0.6 866,429 + MCAODC_04255 0.82 -0.8 866,518 + -0.4 866,518 + +0.1 866,567 + +0.6 866,571 - +1.0 866,589 - +0.6 866,593 + +1.2 866,594 - -0.8 866,605 - -0.2 866,605 - +0.0 866,608 - +0.1 866,629 + -2.6 866,648 - +1.1 866,657 - -0.1 866,697 + -0.0 866,698 - -0.7 866,737 + MCAODC_04260 0.10 +1.4 866,738 - MCAODC_04260 0.11 +1.5 866,782 + MCAODC_04260 0.18 -1.8 866,782 + MCAODC_04260 0.18 +0.8
Or see this region's nucleotide sequence