Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oxyR and argH are separated by 266 nucleotides argH and MCAODC_04080 are separated by 60 nucleotides MCAODC_04080 and argC are separated by 10 nucleotides
MCAODC_04065: oxyR - DNA-binding transcriptional regulator OxyR, at 820,108 to 821,025
oxyR
MCAODC_04075: argH - argininosuccinate lyase, at 821,292 to 822,665
argH
MCAODC_04080: MCAODC_04080 - acetylglutamate kinase, at 822,726 to 823,499
_04080
MCAODC_04085: argC - N-acetyl-gamma-glutamyl-phosphate reductase, at 823,510 to 824,514
argC
Position (kb) 821
822
823 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 820.377 kb on + strand, within oxyR at 820.378 kb on - strand, within oxyR at 820.378 kb on - strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.517 kb on + strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.518 kb on - strand, within oxyR at 820.522 kb on - strand, within oxyR at 820.522 kb on - strand, within oxyR at 820.659 kb on - strand, within oxyR at 820.659 kb on - strand, within oxyR at 820.698 kb on + strand, within oxyR at 820.701 kb on + strand, within oxyR at 820.702 kb on - strand, within oxyR at 820.702 kb on - strand, within oxyR at 820.716 kb on - strand, within oxyR at 820.743 kb on + strand, within oxyR at 820.743 kb on + strand, within oxyR at 820.744 kb on - strand, within oxyR at 820.867 kb on - strand, within oxyR at 821.003 kb on + strand at 821.004 kb on - strand at 821.110 kb on - strand at 821.142 kb on + strand at 821.143 kb on - strand at 821.187 kb on + strand at 821.188 kb on - strand at 821.188 kb on - strand at 821.192 kb on - strand at 821.192 kb on - strand at 821.192 kb on - strand at 821.192 kb on - strand at 821.242 kb on + strand at 821.277 kb on + strand at 821.277 kb on + strand at 821.281 kb on + strand at 821.282 kb on - strand at 821.282 kb on - strand at 821.282 kb on - strand at 821.282 kb on - strand at 821.283 kb on + strand at 821.283 kb on + strand at 821.283 kb on + strand at 821.283 kb on + strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.284 kb on - strand at 821.426 kb on + strand at 821.507 kb on + strand, within argH at 821.507 kb on + strand, within argH at 821.507 kb on + strand, within argH at 821.507 kb on + strand, within argH at 821.508 kb on - strand, within argH at 821.508 kb on - strand, within argH at 821.508 kb on - strand, within argH at 821.508 kb on - strand, within argH at 821.508 kb on - strand, within argH at 821.549 kb on - strand, within argH at 821.645 kb on + strand, within argH at 821.646 kb on - strand, within argH at 821.705 kb on + strand, within argH at 821.705 kb on + strand, within argH at 821.706 kb on - strand, within argH at 821.706 kb on - strand, within argH at 821.716 kb on + strand, within argH at 821.717 kb on - strand, within argH at 821.717 kb on - strand, within argH at 822.082 kb on - strand, within argH at 822.151 kb on + strand, within argH at 822.151 kb on + strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.152 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.206 kb on - strand, within argH at 822.283 kb on - strand, within argH at 822.283 kb on - strand, within argH at 822.296 kb on + strand, within argH at 822.297 kb on - strand, within argH at 822.297 kb on - strand, within argH at 822.338 kb on + strand, within argH at 822.339 kb on - strand, within argH at 822.339 kb on - strand, within argH at 822.339 kb on - strand, within argH at 822.410 kb on + strand, within argH at 822.410 kb on + strand, within argH at 822.411 kb on - strand, within argH at 822.417 kb on - strand, within argH at 822.567 kb on - strand at 822.567 kb on - strand at 822.587 kb on - strand at 822.665 kb on + strand at 822.665 kb on + strand at 822.666 kb on - strand at 822.727 kb on + strand at 822.732 kb on + strand at 822.733 kb on - strand at 822.733 kb on - strand at 822.756 kb on - strand at 822.804 kb on - strand, within MCAODC_04080 at 822.807 kb on + strand, within MCAODC_04080 at 822.858 kb on + strand, within MCAODC_04080 at 822.859 kb on - strand, within MCAODC_04080 at 822.872 kb on + strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.873 kb on - strand, within MCAODC_04080 at 822.875 kb on + strand, within MCAODC_04080 at 822.875 kb on + strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 822.876 kb on - strand, within MCAODC_04080 at 823.082 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.107 kb on - strand, within MCAODC_04080 at 823.113 kb on - strand, within MCAODC_04080 at 823.146 kb on + strand, within MCAODC_04080 at 823.146 kb on + strand, within MCAODC_04080 at 823.147 kb on - strand, within MCAODC_04080 at 823.147 kb on - strand, within MCAODC_04080 at 823.203 kb on + strand, within MCAODC_04080 at 823.204 kb on - strand, within MCAODC_04080 at 823.204 kb on - strand, within MCAODC_04080 at 823.247 kb on + strand, within MCAODC_04080 at 823.248 kb on - strand, within MCAODC_04080 at 823.248 kb on - strand, within MCAODC_04080 at 823.414 kb on + strand, within MCAODC_04080 at 823.415 kb on - strand, within MCAODC_04080 at 823.415 kb on - strand, within MCAODC_04080 at 823.468 kb on - strand at 823.484 kb on + strand at 823.485 kb on - strand at 823.488 kb on + strand at 823.489 kb on - strand at 823.489 kb on - strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.511 kb on + strand at 823.515 kb on + strand at 823.515 kb on + strand at 823.516 kb on - strand at 823.561 kb on + strand at 823.561 kb on + strand at 823.588 kb on + strand at 823.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 820,377 + oxyR MCAODC_04065 0.29 -2.8 820,378 - oxyR MCAODC_04065 0.29 +0.3 820,378 - oxyR MCAODC_04065 0.29 -0.3 820,517 + oxyR MCAODC_04065 0.45 -1.7 820,517 + oxyR MCAODC_04065 0.45 +0.2 820,517 + oxyR MCAODC_04065 0.45 -0.5 820,517 + oxyR MCAODC_04065 0.45 +2.3 820,517 + oxyR MCAODC_04065 0.45 -1.1 820,518 - oxyR MCAODC_04065 0.45 -0.6 820,518 - oxyR MCAODC_04065 0.45 +0.5 820,518 - oxyR MCAODC_04065 0.45 +0.0 820,518 - oxyR MCAODC_04065 0.45 -4.5 820,518 - oxyR MCAODC_04065 0.45 -0.7 820,518 - oxyR MCAODC_04065 0.45 -1.0 820,518 - oxyR MCAODC_04065 0.45 +0.4 820,522 - oxyR MCAODC_04065 0.45 -1.4 820,522 - oxyR MCAODC_04065 0.45 -1.3 820,659 - oxyR MCAODC_04065 0.60 +1.0 820,659 - oxyR MCAODC_04065 0.60 +0.2 820,698 + oxyR MCAODC_04065 0.64 -2.6 820,701 + oxyR MCAODC_04065 0.65 -1.8 820,702 - oxyR MCAODC_04065 0.65 -0.3 820,702 - oxyR MCAODC_04065 0.65 -3.3 820,716 - oxyR MCAODC_04065 0.66 -1.6 820,743 + oxyR MCAODC_04065 0.69 +1.3 820,743 + oxyR MCAODC_04065 0.69 +0.8 820,744 - oxyR MCAODC_04065 0.69 +1.4 820,867 - oxyR MCAODC_04065 0.83 +1.4 821,003 + -0.1 821,004 - -1.1 821,110 - +1.0 821,142 + -0.4 821,143 - +0.5 821,187 + -4.0 821,188 - -0.6 821,188 - -2.5 821,192 - +0.4 821,192 - -1.9 821,192 - +1.3 821,192 - +0.6 821,242 + -0.1 821,277 + -0.8 821,277 + -2.5 821,281 + -0.9 821,282 - +0.7 821,282 - +0.5 821,282 - +1.2 821,282 - -0.8 821,283 + +0.8 821,283 + -2.0 821,283 + -2.1 821,283 + +1.0 821,284 - -0.4 821,284 - +0.6 821,284 - -0.2 821,284 - -1.8 821,284 - -1.7 821,284 - +0.8 821,284 - +0.4 821,284 - +0.3 821,284 - +0.3 821,284 - +1.2 821,426 + -5.4 821,507 + argH MCAODC_04075 0.16 -2.9 821,507 + argH MCAODC_04075 0.16 -4.2 821,507 + argH MCAODC_04075 0.16 -3.0 821,507 + argH MCAODC_04075 0.16 -3.1 821,508 - argH MCAODC_04075 0.16 -2.0 821,508 - argH MCAODC_04075 0.16 -3.8 821,508 - argH MCAODC_04075 0.16 -2.7 821,508 - argH MCAODC_04075 0.16 -2.9 821,508 - argH MCAODC_04075 0.16 -4.0 821,549 - argH MCAODC_04075 0.19 -3.4 821,645 + argH MCAODC_04075 0.26 -0.2 821,646 - argH MCAODC_04075 0.26 -4.5 821,705 + argH MCAODC_04075 0.30 -4.1 821,705 + argH MCAODC_04075 0.30 -2.7 821,706 - argH MCAODC_04075 0.30 -5.0 821,706 - argH MCAODC_04075 0.30 -4.8 821,716 + argH MCAODC_04075 0.31 -3.9 821,717 - argH MCAODC_04075 0.31 -4.5 821,717 - argH MCAODC_04075 0.31 -4.8 822,082 - argH MCAODC_04075 0.57 -3.0 822,151 + argH MCAODC_04075 0.63 -2.6 822,151 + argH MCAODC_04075 0.63 -0.8 822,152 - argH MCAODC_04075 0.63 -2.7 822,152 - argH MCAODC_04075 0.63 -2.7 822,152 - argH MCAODC_04075 0.63 -3.2 822,152 - argH MCAODC_04075 0.63 -5.4 822,152 - argH MCAODC_04075 0.63 -2.3 822,206 - argH MCAODC_04075 0.67 -3.8 822,206 - argH MCAODC_04075 0.67 -2.6 822,206 - argH MCAODC_04075 0.67 -0.8 822,206 - argH MCAODC_04075 0.67 -4.8 822,283 - argH MCAODC_04075 0.72 -1.7 822,283 - argH MCAODC_04075 0.72 -3.4 822,296 + argH MCAODC_04075 0.73 -3.3 822,297 - argH MCAODC_04075 0.73 -3.2 822,297 - argH MCAODC_04075 0.73 -2.0 822,338 + argH MCAODC_04075 0.76 -2.4 822,339 - argH MCAODC_04075 0.76 -2.8 822,339 - argH MCAODC_04075 0.76 -3.4 822,339 - argH MCAODC_04075 0.76 -3.7 822,410 + argH MCAODC_04075 0.81 -3.2 822,410 + argH MCAODC_04075 0.81 -3.4 822,411 - argH MCAODC_04075 0.81 -2.2 822,417 - argH MCAODC_04075 0.82 -2.4 822,567 - -3.7 822,567 - -3.7 822,587 - -4.2 822,665 + -4.2 822,665 + -3.5 822,666 - -1.8 822,727 + -2.6 822,732 + -4.8 822,733 - +1.1 822,733 - +0.7 822,756 - -0.6 822,804 - MCAODC_04080 0.10 -3.3 822,807 + MCAODC_04080 0.10 -1.4 822,858 + MCAODC_04080 0.17 -2.5 822,859 - MCAODC_04080 0.17 -4.8 822,872 + MCAODC_04080 0.19 -4.0 822,873 - MCAODC_04080 0.19 -2.5 822,873 - MCAODC_04080 0.19 -5.2 822,873 - MCAODC_04080 0.19 -3.2 822,873 - MCAODC_04080 0.19 -2.7 822,875 + MCAODC_04080 0.19 -1.7 822,875 + MCAODC_04080 0.19 -4.7 822,876 - MCAODC_04080 0.19 -4.7 822,876 - MCAODC_04080 0.19 -3.6 822,876 - MCAODC_04080 0.19 -0.4 823,082 - MCAODC_04080 0.46 -3.3 823,107 - MCAODC_04080 0.49 -2.7 823,107 - MCAODC_04080 0.49 -1.9 823,107 - MCAODC_04080 0.49 -1.6 823,107 - MCAODC_04080 0.49 -4.1 823,113 - MCAODC_04080 0.50 -3.2 823,146 + MCAODC_04080 0.54 -5.5 823,146 + MCAODC_04080 0.54 -3.8 823,147 - MCAODC_04080 0.54 -4.4 823,147 - MCAODC_04080 0.54 -0.9 823,203 + MCAODC_04080 0.62 -4.2 823,204 - MCAODC_04080 0.62 -3.2 823,204 - MCAODC_04080 0.62 -0.9 823,247 + MCAODC_04080 0.67 -3.3 823,248 - MCAODC_04080 0.67 -3.4 823,248 - MCAODC_04080 0.67 -3.2 823,414 + MCAODC_04080 0.89 -2.9 823,415 - MCAODC_04080 0.89 -3.3 823,415 - MCAODC_04080 0.89 -2.2 823,468 - -6.2 823,484 + -4.1 823,485 - -0.2 823,488 + -2.1 823,489 - -0.1 823,489 - -2.4 823,511 + -4.1 823,511 + -2.0 823,511 + -1.1 823,511 + -4.7 823,515 + -0.5 823,515 + -4.1 823,516 - -0.0 823,561 + -4.1 823,561 + -3.2 823,588 + -2.6 823,588 + +0.4
Or see this region's nucleotide sequence