Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zur and yjbJ are separated by 41 nucleotides yjbJ and dinF are separated by 115 nucleotides dinF and lexA are separated by 72 nucleotides lexA and dgkA are separated by 109 nucleotides
MCAODC_03550: zur - zinc uptake transcriptional repressor Zur, at 711,726 to 712,241
zur
MCAODC_03555: yjbJ - UPF0337 protein YjbJ, at 712,283 to 712,492
yjbJ
MCAODC_03560: dinF - MATE family efflux transporter DinF, at 712,608 to 713,933
dinF
MCAODC_03565: lexA - transcriptional repressor LexA, at 714,006 to 714,614
lexA
MCAODC_03570: dgkA - diacylglycerol kinase, at 714,724 to 715,092
dgkA
Position (kb) 712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 711.623 kb on - strand at 711.752 kb on - strand at 711.752 kb on - strand at 711.754 kb on + strand at 711.755 kb on - strand at 711.785 kb on + strand, within zur at 711.786 kb on - strand, within zur at 711.858 kb on + strand, within zur at 711.859 kb on - strand, within zur at 711.859 kb on - strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.979 kb on - strand, within zur at 711.979 kb on - strand, within zur at 712.014 kb on - strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.029 kb on - strand, within zur at 712.029 kb on - strand, within zur at 712.091 kb on + strand, within zur at 712.091 kb on + strand, within zur at 712.092 kb on - strand, within zur at 712.127 kb on + strand, within zur at 712.128 kb on - strand, within zur at 712.249 kb on + strand at 712.249 kb on + strand at 712.249 kb on + strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.259 kb on + strand at 712.259 kb on + strand at 712.260 kb on - strand at 712.260 kb on - strand at 712.260 kb on - strand at 712.281 kb on - strand at 712.281 kb on - strand at 712.281 kb on - strand at 712.284 kb on + strand at 712.293 kb on + strand at 712.294 kb on - strand at 712.353 kb on + strand, within yjbJ at 712.370 kb on - strand, within yjbJ at 712.391 kb on - strand, within yjbJ at 712.391 kb on - strand, within yjbJ at 712.408 kb on + strand, within yjbJ at 712.408 kb on + strand, within yjbJ at 712.409 kb on - strand, within yjbJ at 712.409 kb on - strand, within yjbJ at 712.447 kb on + strand, within yjbJ at 712.493 kb on - strand at 712.493 kb on - strand at 712.511 kb on - strand at 712.511 kb on - strand at 712.528 kb on - strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.562 kb on + strand at 712.562 kb on + strand at 712.563 kb on - strand at 712.585 kb on + strand at 712.586 kb on - strand at 712.603 kb on - strand at 712.628 kb on + strand at 712.655 kb on + strand at 712.655 kb on + strand at 712.656 kb on - strand at 712.656 kb on - strand at 712.696 kb on - strand at 712.736 kb on + strand at 712.776 kb on - strand, within dinF at 712.782 kb on - strand, within dinF at 712.809 kb on + strand, within dinF at 712.810 kb on - strand, within dinF at 712.811 kb on + strand, within dinF at 712.811 kb on + strand, within dinF at 712.812 kb on - strand, within dinF at 712.812 kb on - strand, within dinF at 712.812 kb on - strand, within dinF at 712.871 kb on + strand, within dinF at 712.872 kb on - strand, within dinF at 712.872 kb on - strand, within dinF at 712.876 kb on + strand, within dinF at 712.949 kb on - strand, within dinF at 712.966 kb on - strand, within dinF at 712.966 kb on - strand, within dinF at 712.971 kb on + strand, within dinF at 712.972 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.163 kb on + strand, within dinF at 713.165 kb on - strand, within dinF at 713.213 kb on + strand, within dinF at 713.214 kb on - strand, within dinF at 713.222 kb on + strand, within dinF at 713.304 kb on - strand, within dinF at 713.381 kb on + strand, within dinF at 713.381 kb on + strand, within dinF at 713.382 kb on - strand, within dinF at 713.382 kb on - strand, within dinF at 713.382 kb on - strand, within dinF at 713.382 kb on - strand, within dinF at 713.440 kb on - strand, within dinF at 713.490 kb on + strand, within dinF at 713.490 kb on + strand, within dinF at 713.490 kb on + strand, within dinF at 713.490 kb on + strand, within dinF at 713.491 kb on - strand, within dinF at 713.491 kb on - strand, within dinF at 713.491 kb on - strand, within dinF at 713.494 kb on - strand, within dinF at 713.585 kb on + strand, within dinF at 713.585 kb on + strand, within dinF at 713.586 kb on - strand, within dinF at 713.586 kb on - strand, within dinF at 713.613 kb on - strand, within dinF at 713.704 kb on + strand, within dinF at 713.704 kb on + strand, within dinF at 713.705 kb on - strand, within dinF at 713.705 kb on - strand, within dinF at 713.756 kb on + strand, within dinF at 713.868 kb on - strand at 713.887 kb on - strand at 713.910 kb on - strand at 714.002 kb on + strand at 714.002 kb on + strand at 714.002 kb on + strand at 714.002 kb on + strand at 714.003 kb on - strand at 714.003 kb on - strand at 714.003 kb on - strand at 714.003 kb on - strand at 714.007 kb on + strand at 714.008 kb on - strand at 714.008 kb on - strand at 714.631 kb on - strand at 714.633 kb on - strand at 714.635 kb on - strand at 714.635 kb on - strand at 714.654 kb on - strand at 714.655 kb on + strand at 714.656 kb on - strand at 714.681 kb on + strand at 714.681 kb on + strand at 714.682 kb on - strand at 714.694 kb on - strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.804 kb on + strand, within dgkA at 714.810 kb on + strand, within dgkA at 714.833 kb on + strand, within dgkA at 714.834 kb on - strand, within dgkA at 714.915 kb on + strand, within dgkA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 711,623 - -0.7 711,752 - -3.7 711,752 - -1.0 711,754 + +0.5 711,755 - +1.4 711,785 + zur MCAODC_03550 0.11 -2.3 711,786 - zur MCAODC_03550 0.12 +1.9 711,858 + zur MCAODC_03550 0.26 -0.0 711,859 - zur MCAODC_03550 0.26 -1.3 711,859 - zur MCAODC_03550 0.26 +0.4 711,978 + zur MCAODC_03550 0.49 -1.9 711,978 + zur MCAODC_03550 0.49 +0.3 711,978 + zur MCAODC_03550 0.49 -1.2 711,978 + zur MCAODC_03550 0.49 +1.0 711,978 + zur MCAODC_03550 0.49 +0.3 711,979 - zur MCAODC_03550 0.49 -0.3 711,979 - zur MCAODC_03550 0.49 -1.7 712,014 - zur MCAODC_03550 0.56 -1.2 712,022 + zur MCAODC_03550 0.57 -0.0 712,022 + zur MCAODC_03550 0.57 +1.6 712,022 + zur MCAODC_03550 0.57 -0.8 712,022 + zur MCAODC_03550 0.57 +1.2 712,022 + zur MCAODC_03550 0.57 +0.3 712,023 - zur MCAODC_03550 0.58 -1.9 712,023 - zur MCAODC_03550 0.58 +2.4 712,023 - zur MCAODC_03550 0.58 -2.0 712,023 - zur MCAODC_03550 0.58 -2.3 712,029 - zur MCAODC_03550 0.59 -3.1 712,029 - zur MCAODC_03550 0.59 -0.4 712,091 + zur MCAODC_03550 0.71 -1.0 712,091 + zur MCAODC_03550 0.71 +0.6 712,092 - zur MCAODC_03550 0.71 +0.2 712,127 + zur MCAODC_03550 0.78 +0.3 712,128 - zur MCAODC_03550 0.78 -1.6 712,249 + +0.8 712,249 + +1.0 712,249 + -2.4 712,250 - +0.4 712,250 - +1.6 712,250 - -1.1 712,250 - +1.2 712,250 - -2.1 712,250 - +1.1 712,250 - +0.4 712,250 - -1.5 712,259 + +1.8 712,259 + -0.0 712,260 - -1.1 712,260 - -0.5 712,260 - -1.0 712,281 - -0.0 712,281 - +0.1 712,281 - -0.2 712,284 + -1.9 712,293 + +0.1 712,294 - +0.6 712,353 + yjbJ MCAODC_03555 0.33 +2.8 712,370 - yjbJ MCAODC_03555 0.41 +0.2 712,391 - yjbJ MCAODC_03555 0.51 -1.7 712,391 - yjbJ MCAODC_03555 0.51 +0.2 712,408 + yjbJ MCAODC_03555 0.60 +2.6 712,408 + yjbJ MCAODC_03555 0.60 +0.6 712,409 - yjbJ MCAODC_03555 0.60 +0.3 712,409 - yjbJ MCAODC_03555 0.60 -0.2 712,447 + yjbJ MCAODC_03555 0.78 +0.7 712,493 - +0.9 712,493 - -0.8 712,511 - +0.5 712,511 - +0.5 712,528 - -0.1 712,556 + -3.2 712,556 + -3.2 712,556 + -0.2 712,556 + +0.0 712,556 + -0.4 712,562 + -0.5 712,562 + +1.0 712,563 - -1.4 712,585 + -0.0 712,586 - +0.9 712,603 - -0.4 712,628 + +1.1 712,655 + -0.3 712,655 + -0.1 712,656 - +0.3 712,656 - +0.9 712,696 - +1.0 712,736 + +1.2 712,776 - dinF MCAODC_03560 0.13 +1.4 712,782 - dinF MCAODC_03560 0.13 -0.1 712,809 + dinF MCAODC_03560 0.15 -1.9 712,810 - dinF MCAODC_03560 0.15 -1.0 712,811 + dinF MCAODC_03560 0.15 -0.4 712,811 + dinF MCAODC_03560 0.15 -0.7 712,812 - dinF MCAODC_03560 0.15 +2.8 712,812 - dinF MCAODC_03560 0.15 -2.6 712,812 - dinF MCAODC_03560 0.15 +0.1 712,871 + dinF MCAODC_03560 0.20 -1.8 712,872 - dinF MCAODC_03560 0.20 -2.1 712,872 - dinF MCAODC_03560 0.20 +1.5 712,876 + dinF MCAODC_03560 0.20 +0.8 712,949 - dinF MCAODC_03560 0.26 -0.8 712,966 - dinF MCAODC_03560 0.27 +0.5 712,966 - dinF MCAODC_03560 0.27 +0.3 712,971 + dinF MCAODC_03560 0.27 -0.7 712,972 - dinF MCAODC_03560 0.27 -2.1 713,039 - dinF MCAODC_03560 0.33 +0.8 713,039 - dinF MCAODC_03560 0.33 +3.4 713,039 - dinF MCAODC_03560 0.33 +0.5 713,039 - dinF MCAODC_03560 0.33 -1.8 713,163 + dinF MCAODC_03560 0.42 +0.7 713,165 - dinF MCAODC_03560 0.42 -3.1 713,213 + dinF MCAODC_03560 0.46 +0.1 713,214 - dinF MCAODC_03560 0.46 -1.6 713,222 + dinF MCAODC_03560 0.46 -1.8 713,304 - dinF MCAODC_03560 0.52 +0.2 713,381 + dinF MCAODC_03560 0.58 +0.2 713,381 + dinF MCAODC_03560 0.58 -0.2 713,382 - dinF MCAODC_03560 0.58 +0.1 713,382 - dinF MCAODC_03560 0.58 +1.0 713,382 - dinF MCAODC_03560 0.58 +0.5 713,382 - dinF MCAODC_03560 0.58 -1.5 713,440 - dinF MCAODC_03560 0.63 -0.4 713,490 + dinF MCAODC_03560 0.67 +0.7 713,490 + dinF MCAODC_03560 0.67 +0.1 713,490 + dinF MCAODC_03560 0.67 +0.8 713,490 + dinF MCAODC_03560 0.67 -0.3 713,491 - dinF MCAODC_03560 0.67 -3.0 713,491 - dinF MCAODC_03560 0.67 +0.8 713,491 - dinF MCAODC_03560 0.67 -0.5 713,494 - dinF MCAODC_03560 0.67 +0.4 713,585 + dinF MCAODC_03560 0.74 +1.2 713,585 + dinF MCAODC_03560 0.74 -0.2 713,586 - dinF MCAODC_03560 0.74 -2.1 713,586 - dinF MCAODC_03560 0.74 +0.6 713,613 - dinF MCAODC_03560 0.76 -2.8 713,704 + dinF MCAODC_03560 0.83 -1.2 713,704 + dinF MCAODC_03560 0.83 -0.7 713,705 - dinF MCAODC_03560 0.83 +0.4 713,705 - dinF MCAODC_03560 0.83 +0.3 713,756 + dinF MCAODC_03560 0.87 +1.1 713,868 - -1.1 713,887 - +1.7 713,910 - +1.5 714,002 + -0.1 714,002 + +0.6 714,002 + +0.5 714,002 + -2.1 714,003 - -0.1 714,003 - +0.6 714,003 - -0.8 714,003 - +1.1 714,007 + -0.3 714,008 - +0.6 714,008 - +0.1 714,631 - +0.9 714,633 - +1.3 714,635 - -3.7 714,635 - +1.0 714,654 - -1.3 714,655 + -1.5 714,656 - -0.3 714,681 + +1.1 714,681 + -1.1 714,682 - +0.9 714,694 - +0.1 714,759 + -0.5 714,759 + +0.6 714,759 + -0.1 714,759 + -0.0 714,804 + dgkA MCAODC_03570 0.22 -0.1 714,810 + dgkA MCAODC_03570 0.23 +1.0 714,833 + dgkA MCAODC_03570 0.30 +1.2 714,834 - dgkA MCAODC_03570 0.30 -1.4 714,915 + dgkA MCAODC_03570 0.52 -0.3
Or see this region's nucleotide sequence