Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeC and MCAODC_03395 are separated by 428 nucleotides MCAODC_03395 and ssb1 are separated by 98 nucleotides ssb1 and uvrA are separated by 254 nucleotides
MCAODC_03390: pdeC - c-di-GMP phosphodiesterase PdeC, at 683,861 to 685,447
pdeC
MCAODC_03395: MCAODC_03395 - Uncharacterized protein YjcB, at 685,876 to 686,157
_03395
MCAODC_03400: ssb1 - single-stranded DNA-binding protein SSB1, at 686,256 to 686,792
ssb1
MCAODC_03405: uvrA - excinuclease ABC subunit UvrA, at 687,047 to 689,869
uvrA
Position (kb) 686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 685.330 kb on + strand at 685.395 kb on - strand at 685.403 kb on - strand at 685.421 kb on + strand at 685.421 kb on + strand at 685.470 kb on + strand at 685.470 kb on + strand at 685.471 kb on - strand at 685.471 kb on - strand at 685.514 kb on + strand at 685.514 kb on + strand at 685.514 kb on + strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.525 kb on + strand at 685.526 kb on - strand at 685.526 kb on - strand at 685.530 kb on + strand at 685.531 kb on - strand at 685.532 kb on + strand at 685.532 kb on + strand at 685.533 kb on - strand at 685.537 kb on - strand at 685.537 kb on - strand at 685.648 kb on + strand at 685.650 kb on + strand at 685.651 kb on - strand at 685.651 kb on - strand at 685.692 kb on + strand at 685.693 kb on - strand at 685.706 kb on + strand at 685.707 kb on - strand at 685.737 kb on + strand at 685.737 kb on + strand at 685.737 kb on + strand at 685.810 kb on + strand at 685.924 kb on - strand, within MCAODC_03395 at 685.924 kb on - strand, within MCAODC_03395 at 685.982 kb on - strand, within MCAODC_03395 at 686.109 kb on - strand, within MCAODC_03395 at 686.158 kb on + strand at 686.159 kb on - strand at 686.162 kb on + strand at 686.162 kb on + strand at 686.163 kb on - strand at 686.163 kb on - strand at 686.233 kb on + strand at 686.866 kb on + strand at 686.866 kb on + strand at 686.866 kb on + strand at 686.867 kb on - strand at 686.870 kb on - strand at 686.870 kb on - strand at 686.915 kb on + strand at 686.916 kb on - strand at 686.916 kb on - strand at 686.949 kb on + strand at 686.952 kb on - strand at 686.976 kb on + strand at 686.976 kb on + strand at 687.052 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.180 kb on + strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.181 kb on - strand at 687.182 kb on + strand at 687.183 kb on - strand at 687.183 kb on - strand at 687.183 kb on - strand at 687.204 kb on - strand at 687.272 kb on - strand at 687.334 kb on + strand, within uvrA at 687.365 kb on + strand, within uvrA at 687.365 kb on + strand, within uvrA at 687.365 kb on + strand, within uvrA at 687.365 kb on + strand, within uvrA at 687.366 kb on - strand, within uvrA at 687.366 kb on - strand, within uvrA at 687.366 kb on - strand, within uvrA at 687.380 kb on + strand, within uvrA at 687.381 kb on - strand, within uvrA at 687.566 kb on + strand, within uvrA at 687.566 kb on + strand, within uvrA at 687.566 kb on + strand, within uvrA at 687.566 kb on + strand, within uvrA at 687.567 kb on - strand, within uvrA at 687.567 kb on - strand, within uvrA at 687.567 kb on - strand, within uvrA at 687.580 kb on + strand, within uvrA at 687.581 kb on - strand, within uvrA at 687.581 kb on - strand, within uvrA at 687.581 kb on - strand, within uvrA at 687.643 kb on + strand, within uvrA at 687.644 kb on - strand, within uvrA at 687.644 kb on - strand, within uvrA at 687.737 kb on - strand, within uvrA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 685,330 + +0.3 685,395 - +0.5 685,403 - -0.8 685,421 + -2.0 685,421 + +0.7 685,470 + -0.9 685,470 + +0.1 685,471 - -0.1 685,471 - +1.0 685,514 + -2.7 685,514 + +0.5 685,514 + +0.2 685,515 - +0.3 685,515 - +1.1 685,525 + +1.2 685,526 - +0.3 685,526 - +0.7 685,530 + -0.1 685,531 - +0.5 685,532 + +1.2 685,532 + +0.8 685,533 - -2.6 685,537 - -0.7 685,537 - -0.2 685,648 + -0.1 685,650 + +1.0 685,651 - +0.5 685,651 - -0.0 685,692 + +1.8 685,693 - -1.5 685,706 + +0.4 685,707 - +0.2 685,737 + +0.1 685,737 + -0.8 685,737 + +0.0 685,810 + -1.2 685,924 - MCAODC_03395 0.17 +0.6 685,924 - MCAODC_03395 0.17 +1.3 685,982 - MCAODC_03395 0.38 -0.4 686,109 - MCAODC_03395 0.83 -1.3 686,158 + +0.1 686,159 - +0.6 686,162 + +1.8 686,162 + +1.7 686,163 - -2.6 686,163 - +0.5 686,233 + +1.5 686,866 + -0.8 686,866 + -2.3 686,866 + -0.8 686,867 - -1.8 686,870 - +1.6 686,870 - -0.5 686,915 + +1.2 686,916 - +1.1 686,916 - +0.2 686,949 + +0.5 686,952 - -0.6 686,976 + +2.2 686,976 + +0.6 687,052 + +0.6 687,180 + -1.7 687,180 + +0.5 687,180 + -0.1 687,180 + -0.3 687,180 + +0.1 687,180 + +0.9 687,180 + +0.6 687,180 + +1.1 687,181 - -0.5 687,181 - -0.4 687,181 - +0.7 687,181 - +0.5 687,181 - +0.2 687,181 - -0.3 687,181 - +1.9 687,181 - -0.1 687,181 - -0.1 687,181 - +0.6 687,181 - +0.1 687,182 + +0.2 687,183 - +1.0 687,183 - +1.1 687,183 - -0.0 687,204 - +0.3 687,272 - +0.5 687,334 + uvrA MCAODC_03405 0.10 +0.4 687,365 + uvrA MCAODC_03405 0.11 +1.0 687,365 + uvrA MCAODC_03405 0.11 +1.1 687,365 + uvrA MCAODC_03405 0.11 +0.3 687,365 + uvrA MCAODC_03405 0.11 -0.1 687,366 - uvrA MCAODC_03405 0.11 -1.5 687,366 - uvrA MCAODC_03405 0.11 +0.7 687,366 - uvrA MCAODC_03405 0.11 +0.2 687,380 + uvrA MCAODC_03405 0.12 -2.4 687,381 - uvrA MCAODC_03405 0.12 -0.3 687,566 + uvrA MCAODC_03405 0.18 +1.0 687,566 + uvrA MCAODC_03405 0.18 -1.5 687,566 + uvrA MCAODC_03405 0.18 +0.1 687,566 + uvrA MCAODC_03405 0.18 +0.8 687,567 - uvrA MCAODC_03405 0.18 +1.0 687,567 - uvrA MCAODC_03405 0.18 -1.1 687,567 - uvrA MCAODC_03405 0.18 -0.9 687,580 + uvrA MCAODC_03405 0.19 +0.5 687,581 - uvrA MCAODC_03405 0.19 -0.1 687,581 - uvrA MCAODC_03405 0.19 -1.5 687,581 - uvrA MCAODC_03405 0.19 -0.6 687,643 + uvrA MCAODC_03405 0.21 -0.1 687,644 - uvrA MCAODC_03405 0.21 +0.5 687,644 - uvrA MCAODC_03405 0.21 -0.8 687,737 - uvrA MCAODC_03405 0.24 +0.4
Or see this region's nucleotide sequence