Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnP and yjdP are separated by 76 nucleotides yjdP and MCAODC_03215 are separated by 68 nucleotides MCAODC_03215 and rbsA are separated by 113 nucleotides
MCAODC_03205: phnP - phosphonate metabolism protein PhnP, at 644,109 to 644,867
phnP
MCAODC_03210: yjdP - Uncharacterized protein YjdP, at 644,944 to 645,273
yjdP
MCAODC_03215: MCAODC_03215 - hybrid sensor histidine kinase/response regulator, at 645,342 to 647,612
_03215
MCAODC_03220: rbsA - Ribose import ATP-binding protein RbsA, at 647,726 to 649,246
rbsA
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 644.342 kb on + strand, within phnP at 644.342 kb on + strand, within phnP at 644.343 kb on - strand, within phnP at 644.343 kb on - strand, within phnP at 644.343 kb on - strand, within phnP at 644.510 kb on - strand, within phnP at 644.657 kb on - strand, within phnP at 644.716 kb on + strand, within phnP at 644.716 kb on + strand, within phnP at 644.716 kb on + strand, within phnP at 644.717 kb on - strand, within phnP at 644.954 kb on + strand at 644.954 kb on + strand at 644.955 kb on - strand at 644.986 kb on + strand, within yjdP at 644.986 kb on + strand, within yjdP at 644.987 kb on - strand, within yjdP at 645.007 kb on - strand, within yjdP at 645.071 kb on + strand, within yjdP at 645.071 kb on + strand, within yjdP at 645.071 kb on + strand, within yjdP at 645.072 kb on - strand, within yjdP at 645.072 kb on - strand, within yjdP at 645.072 kb on - strand, within yjdP at 645.153 kb on + strand, within yjdP at 645.154 kb on - strand, within yjdP at 645.154 kb on - strand, within yjdP at 645.154 kb on - strand, within yjdP at 645.180 kb on + strand, within yjdP at 645.181 kb on - strand, within yjdP at 645.202 kb on - strand, within yjdP at 645.296 kb on + strand at 645.297 kb on - strand at 645.299 kb on + strand at 645.299 kb on + strand at 645.299 kb on + strand at 645.299 kb on + strand at 645.299 kb on + strand at 645.299 kb on + strand at 645.300 kb on - strand at 645.300 kb on - strand at 645.323 kb on + strand at 645.459 kb on + strand at 645.460 kb on - strand at 645.535 kb on - strand at 645.546 kb on - strand at 645.620 kb on - strand, within MCAODC_03215 at 645.681 kb on + strand, within MCAODC_03215 at 645.682 kb on - strand, within MCAODC_03215 at 645.682 kb on - strand, within MCAODC_03215 at 645.682 kb on - strand, within MCAODC_03215 at 645.682 kb on - strand, within MCAODC_03215 at 645.717 kb on + strand, within MCAODC_03215 at 645.841 kb on + strand, within MCAODC_03215 at 645.841 kb on + strand, within MCAODC_03215 at 645.841 kb on + strand, within MCAODC_03215 at 645.890 kb on + strand, within MCAODC_03215 at 645.907 kb on - strand, within MCAODC_03215 at 645.932 kb on + strand, within MCAODC_03215 at 646.176 kb on + strand, within MCAODC_03215 at 646.177 kb on - strand, within MCAODC_03215 at 646.185 kb on + strand, within MCAODC_03215 at 646.227 kb on + strand, within MCAODC_03215 at 646.228 kb on - strand, within MCAODC_03215 at 646.228 kb on - strand, within MCAODC_03215 at 646.306 kb on - strand, within MCAODC_03215 at 646.356 kb on - strand, within MCAODC_03215 at 646.373 kb on + strand, within MCAODC_03215 at 646.377 kb on - strand, within MCAODC_03215 at 646.435 kb on - strand, within MCAODC_03215 at 646.435 kb on - strand, within MCAODC_03215 at 646.438 kb on - strand, within MCAODC_03215 at 646.438 kb on - strand, within MCAODC_03215 at 646.438 kb on - strand, within MCAODC_03215 at 646.501 kb on - strand, within MCAODC_03215 at 646.590 kb on + strand, within MCAODC_03215 at 646.678 kb on + strand, within MCAODC_03215 at 646.679 kb on - strand, within MCAODC_03215 at 646.679 kb on - strand, within MCAODC_03215 at 646.679 kb on - strand, within MCAODC_03215 at 646.682 kb on + strand, within MCAODC_03215 at 646.682 kb on + strand, within MCAODC_03215 at 646.682 kb on + strand, within MCAODC_03215 at 646.682 kb on + strand, within MCAODC_03215 at 646.682 kb on + strand, within MCAODC_03215 at 646.683 kb on - strand, within MCAODC_03215 at 646.683 kb on - strand, within MCAODC_03215 at 646.683 kb on - strand, within MCAODC_03215 at 646.683 kb on - strand, within MCAODC_03215 at 646.683 kb on - strand, within MCAODC_03215 at 646.683 kb on - strand, within MCAODC_03215 at 646.684 kb on + strand, within MCAODC_03215 at 646.685 kb on - strand, within MCAODC_03215 at 646.685 kb on - strand, within MCAODC_03215 at 646.685 kb on - strand, within MCAODC_03215 at 646.685 kb on - strand, within MCAODC_03215 at 646.685 kb on - strand, within MCAODC_03215 at 646.717 kb on - strand, within MCAODC_03215 at 646.766 kb on - strand, within MCAODC_03215 at 646.865 kb on + strand, within MCAODC_03215 at 646.865 kb on + strand, within MCAODC_03215 at 646.865 kb on + strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.867 kb on + strand, within MCAODC_03215 at 646.867 kb on + strand, within MCAODC_03215 at 646.868 kb on - strand, within MCAODC_03215 at 646.868 kb on - strand, within MCAODC_03215 at 646.868 kb on - strand, within MCAODC_03215 at 646.965 kb on - strand, within MCAODC_03215 at 646.965 kb on - strand, within MCAODC_03215 at 647.027 kb on + strand, within MCAODC_03215 at 647.028 kb on - strand, within MCAODC_03215 at 647.093 kb on + strand, within MCAODC_03215 at 647.093 kb on + strand, within MCAODC_03215 at 647.094 kb on - strand, within MCAODC_03215 at 647.135 kb on - strand, within MCAODC_03215 at 647.135 kb on - strand, within MCAODC_03215 at 647.139 kb on + strand, within MCAODC_03215 at 647.139 kb on + strand, within MCAODC_03215 at 647.149 kb on + strand, within MCAODC_03215 at 647.161 kb on - strand, within MCAODC_03215 at 647.161 kb on - strand, within MCAODC_03215 at 647.207 kb on + strand, within MCAODC_03215 at 647.237 kb on + strand, within MCAODC_03215 at 647.237 kb on + strand, within MCAODC_03215 at 647.238 kb on - strand, within MCAODC_03215 at 647.280 kb on + strand, within MCAODC_03215 at 647.316 kb on + strand, within MCAODC_03215 at 647.316 kb on + strand, within MCAODC_03215 at 647.357 kb on + strand, within MCAODC_03215 at 647.357 kb on + strand, within MCAODC_03215 at 647.359 kb on + strand, within MCAODC_03215 at 647.360 kb on - strand, within MCAODC_03215 at 647.640 kb on + strand at 647.649 kb on + strand at 647.649 kb on + strand at 647.676 kb on + strand at 647.676 kb on + strand at 647.677 kb on - strand at 647.759 kb on - strand at 647.784 kb on - strand at 647.813 kb on + strand at 647.813 kb on + strand at 647.814 kb on - strand at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.892 kb on - strand, within rbsA at 647.892 kb on - strand, within rbsA at 647.892 kb on - strand, within rbsA at 647.974 kb on + strand, within rbsA at 647.975 kb on - strand, within rbsA at 647.984 kb on + strand, within rbsA at 648.073 kb on + strand, within rbsA at 648.074 kb on - strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.085 kb on - strand, within rbsA at 648.085 kb on - strand, within rbsA at 648.085 kb on - strand, within rbsA at 648.196 kb on - strand, within rbsA at 648.196 kb on - strand, within rbsA at 648.196 kb on - strand, within rbsA at 648.280 kb on + strand, within rbsA at 648.281 kb on - strand, within rbsA at 648.311 kb on - strand, within rbsA at 648.311 kb on - strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.341 kb on + strand, within rbsA at 648.341 kb on + strand, within rbsA at 648.342 kb on - strand, within rbsA at 648.342 kb on - strand, within rbsA at 648.370 kb on - strand, within rbsA at 648.383 kb on + strand, within rbsA at 648.384 kb on - strand, within rbsA at 648.384 kb on - strand, within rbsA at 648.469 kb on + strand, within rbsA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 644,342 + phnP MCAODC_03205 0.31 +0.3 644,342 + phnP MCAODC_03205 0.31 -0.3 644,343 - phnP MCAODC_03205 0.31 -0.0 644,343 - phnP MCAODC_03205 0.31 +0.2 644,343 - phnP MCAODC_03205 0.31 +0.6 644,510 - phnP MCAODC_03205 0.53 +0.8 644,657 - phnP MCAODC_03205 0.72 +0.1 644,716 + phnP MCAODC_03205 0.80 +0.2 644,716 + phnP MCAODC_03205 0.80 +0.8 644,716 + phnP MCAODC_03205 0.80 +0.3 644,717 - phnP MCAODC_03205 0.80 +0.3 644,954 + +0.9 644,954 + +2.1 644,955 - +0.2 644,986 + yjdP MCAODC_03210 0.13 +1.5 644,986 + yjdP MCAODC_03210 0.13 -1.1 644,987 - yjdP MCAODC_03210 0.13 -1.9 645,007 - yjdP MCAODC_03210 0.19 -0.8 645,071 + yjdP MCAODC_03210 0.38 -1.6 645,071 + yjdP MCAODC_03210 0.38 +3.1 645,071 + yjdP MCAODC_03210 0.38 +1.0 645,072 - yjdP MCAODC_03210 0.39 +0.8 645,072 - yjdP MCAODC_03210 0.39 +0.5 645,072 - yjdP MCAODC_03210 0.39 +1.8 645,153 + yjdP MCAODC_03210 0.63 -0.1 645,154 - yjdP MCAODC_03210 0.64 -0.3 645,154 - yjdP MCAODC_03210 0.64 +0.6 645,154 - yjdP MCAODC_03210 0.64 +0.6 645,180 + yjdP MCAODC_03210 0.72 -0.8 645,181 - yjdP MCAODC_03210 0.72 +0.8 645,202 - yjdP MCAODC_03210 0.78 -1.0 645,296 + +1.2 645,297 - +1.2 645,299 + -0.4 645,299 + +0.7 645,299 + -0.0 645,299 + +2.3 645,299 + +0.2 645,299 + +0.6 645,300 - +1.6 645,300 - +0.7 645,323 + -0.2 645,459 + -3.9 645,460 - -0.5 645,535 - +0.6 645,546 - +2.4 645,620 - MCAODC_03215 0.12 +1.1 645,681 + MCAODC_03215 0.15 +0.1 645,682 - MCAODC_03215 0.15 -0.8 645,682 - MCAODC_03215 0.15 -1.7 645,682 - MCAODC_03215 0.15 +1.6 645,682 - MCAODC_03215 0.15 +0.6 645,717 + MCAODC_03215 0.17 -0.1 645,841 + MCAODC_03215 0.22 +0.6 645,841 + MCAODC_03215 0.22 +0.0 645,841 + MCAODC_03215 0.22 +1.2 645,890 + MCAODC_03215 0.24 +0.5 645,907 - MCAODC_03215 0.25 +1.7 645,932 + MCAODC_03215 0.26 +0.2 646,176 + MCAODC_03215 0.37 +0.6 646,177 - MCAODC_03215 0.37 -0.2 646,185 + MCAODC_03215 0.37 -0.1 646,227 + MCAODC_03215 0.39 -2.9 646,228 - MCAODC_03215 0.39 +0.0 646,228 - MCAODC_03215 0.39 +0.3 646,306 - MCAODC_03215 0.42 -0.5 646,356 - MCAODC_03215 0.45 -0.7 646,373 + MCAODC_03215 0.45 +0.7 646,377 - MCAODC_03215 0.46 +0.8 646,435 - MCAODC_03215 0.48 +0.7 646,435 - MCAODC_03215 0.48 +2.0 646,438 - MCAODC_03215 0.48 -0.1 646,438 - MCAODC_03215 0.48 -2.4 646,438 - MCAODC_03215 0.48 -0.1 646,501 - MCAODC_03215 0.51 +0.4 646,590 + MCAODC_03215 0.55 -0.0 646,678 + MCAODC_03215 0.59 +1.5 646,679 - MCAODC_03215 0.59 +1.1 646,679 - MCAODC_03215 0.59 -1.6 646,679 - MCAODC_03215 0.59 -0.6 646,682 + MCAODC_03215 0.59 +0.2 646,682 + MCAODC_03215 0.59 +0.2 646,682 + MCAODC_03215 0.59 -0.2 646,682 + MCAODC_03215 0.59 -2.0 646,682 + MCAODC_03215 0.59 -0.4 646,683 - MCAODC_03215 0.59 -0.3 646,683 - MCAODC_03215 0.59 -0.3 646,683 - MCAODC_03215 0.59 -0.5 646,683 - MCAODC_03215 0.59 -1.0 646,683 - MCAODC_03215 0.59 +0.1 646,683 - MCAODC_03215 0.59 +0.1 646,684 + MCAODC_03215 0.59 -2.3 646,685 - MCAODC_03215 0.59 +1.2 646,685 - MCAODC_03215 0.59 +0.3 646,685 - MCAODC_03215 0.59 +0.5 646,685 - MCAODC_03215 0.59 +0.9 646,685 - MCAODC_03215 0.59 -3.4 646,717 - MCAODC_03215 0.61 +0.7 646,766 - MCAODC_03215 0.63 -0.4 646,865 + MCAODC_03215 0.67 -2.7 646,865 + MCAODC_03215 0.67 -0.6 646,865 + MCAODC_03215 0.67 -0.1 646,866 - MCAODC_03215 0.67 +1.6 646,866 - MCAODC_03215 0.67 +1.4 646,866 - MCAODC_03215 0.67 -0.9 646,866 - MCAODC_03215 0.67 -0.6 646,866 - MCAODC_03215 0.67 +1.3 646,866 - MCAODC_03215 0.67 -0.4 646,866 - MCAODC_03215 0.67 +0.1 646,866 - MCAODC_03215 0.67 +0.8 646,867 + MCAODC_03215 0.67 +0.5 646,867 + MCAODC_03215 0.67 -0.6 646,868 - MCAODC_03215 0.67 -0.0 646,868 - MCAODC_03215 0.67 -1.0 646,868 - MCAODC_03215 0.67 -0.7 646,965 - MCAODC_03215 0.71 +2.1 646,965 - MCAODC_03215 0.71 -0.0 647,027 + MCAODC_03215 0.74 +1.0 647,028 - MCAODC_03215 0.74 -1.5 647,093 + MCAODC_03215 0.77 +0.3 647,093 + MCAODC_03215 0.77 +1.7 647,094 - MCAODC_03215 0.77 +1.5 647,135 - MCAODC_03215 0.79 +0.5 647,135 - MCAODC_03215 0.79 +0.3 647,139 + MCAODC_03215 0.79 +0.5 647,139 + MCAODC_03215 0.79 +0.2 647,149 + MCAODC_03215 0.80 +0.5 647,161 - MCAODC_03215 0.80 -0.5 647,161 - MCAODC_03215 0.80 -0.0 647,207 + MCAODC_03215 0.82 +0.1 647,237 + MCAODC_03215 0.83 -0.2 647,237 + MCAODC_03215 0.83 +0.0 647,238 - MCAODC_03215 0.83 -0.3 647,280 + MCAODC_03215 0.85 +0.7 647,316 + MCAODC_03215 0.87 +0.0 647,316 + MCAODC_03215 0.87 +0.2 647,357 + MCAODC_03215 0.89 +0.5 647,357 + MCAODC_03215 0.89 +0.1 647,359 + MCAODC_03215 0.89 +0.3 647,360 - MCAODC_03215 0.89 -1.1 647,640 + -1.0 647,649 + +1.3 647,649 + +0.3 647,676 + -0.6 647,676 + +0.9 647,677 - -1.3 647,759 - +0.3 647,784 - -0.4 647,813 + -1.1 647,813 + +0.8 647,814 - +0.9 647,891 + rbsA MCAODC_03220 0.11 +0.2 647,891 + rbsA MCAODC_03220 0.11 +1.3 647,891 + rbsA MCAODC_03220 0.11 -1.1 647,891 + rbsA MCAODC_03220 0.11 -0.4 647,891 + rbsA MCAODC_03220 0.11 -2.5 647,892 - rbsA MCAODC_03220 0.11 +0.5 647,892 - rbsA MCAODC_03220 0.11 -0.1 647,892 - rbsA MCAODC_03220 0.11 -0.4 647,974 + rbsA MCAODC_03220 0.16 +0.6 647,975 - rbsA MCAODC_03220 0.16 +1.3 647,984 + rbsA MCAODC_03220 0.17 +0.2 648,073 + rbsA MCAODC_03220 0.23 -2.6 648,074 - rbsA MCAODC_03220 0.23 -1.2 648,084 + rbsA MCAODC_03220 0.24 -2.7 648,084 + rbsA MCAODC_03220 0.24 +0.9 648,084 + rbsA MCAODC_03220 0.24 -0.5 648,084 + rbsA MCAODC_03220 0.24 +0.7 648,085 - rbsA MCAODC_03220 0.24 -1.4 648,085 - rbsA MCAODC_03220 0.24 +1.8 648,085 - rbsA MCAODC_03220 0.24 +0.4 648,196 - rbsA MCAODC_03220 0.31 -1.5 648,196 - rbsA MCAODC_03220 0.31 -1.1 648,196 - rbsA MCAODC_03220 0.31 +1.6 648,280 + rbsA MCAODC_03220 0.36 -2.0 648,281 - rbsA MCAODC_03220 0.36 +0.0 648,311 - rbsA MCAODC_03220 0.38 +1.5 648,311 - rbsA MCAODC_03220 0.38 -0.3 648,314 + rbsA MCAODC_03220 0.39 +0.3 648,314 + rbsA MCAODC_03220 0.39 +0.2 648,314 + rbsA MCAODC_03220 0.39 +0.5 648,314 + rbsA MCAODC_03220 0.39 -2.6 648,314 + rbsA MCAODC_03220 0.39 +0.9 648,314 + rbsA MCAODC_03220 0.39 +0.8 648,315 - rbsA MCAODC_03220 0.39 +0.5 648,315 - rbsA MCAODC_03220 0.39 -0.6 648,315 - rbsA MCAODC_03220 0.39 -1.8 648,315 - rbsA MCAODC_03220 0.39 -1.0 648,315 - rbsA MCAODC_03220 0.39 +1.3 648,315 - rbsA MCAODC_03220 0.39 -0.1 648,341 + rbsA MCAODC_03220 0.40 +0.4 648,341 + rbsA MCAODC_03220 0.40 +1.3 648,342 - rbsA MCAODC_03220 0.40 -0.8 648,342 - rbsA MCAODC_03220 0.40 +0.1 648,370 - rbsA MCAODC_03220 0.42 -0.8 648,383 + rbsA MCAODC_03220 0.43 -1.2 648,384 - rbsA MCAODC_03220 0.43 +0.0 648,384 - rbsA MCAODC_03220 0.43 +0.2 648,469 + rbsA MCAODC_03220 0.49 -0.2
Or see this region's nucleotide sequence