Strain Fitness in Escherichia coli ECRC101 around MCAODC_03100
Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Arabinose |
---|---|---|---|---|---|
remove | |||||
626,672 | + | pmrB | MCAODC_03085 | 0.31 | -0.7 |
626,672 | + | pmrB | MCAODC_03085 | 0.31 | -1.9 |
626,778 | - | pmrB | MCAODC_03085 | 0.40 | +1.3 |
626,778 | - | pmrB | MCAODC_03085 | 0.40 | -0.9 |
626,781 | + | pmrB | MCAODC_03085 | 0.41 | -0.0 |
626,782 | - | pmrB | MCAODC_03085 | 0.41 | -0.3 |
626,782 | - | pmrB | MCAODC_03085 | 0.41 | +0.1 |
626,870 | + | pmrB | MCAODC_03085 | 0.49 | -0.2 |
626,870 | + | pmrB | MCAODC_03085 | 0.49 | +1.0 |
626,870 | + | pmrB | MCAODC_03085 | 0.49 | +0.6 |
626,871 | - | pmrB | MCAODC_03085 | 0.49 | -0.4 |
626,961 | + | pmrB | MCAODC_03085 | 0.57 | +1.2 |
626,965 | + | pmrB | MCAODC_03085 | 0.57 | +0.6 |
626,966 | - | pmrB | MCAODC_03085 | 0.57 | -0.7 |
626,966 | - | pmrB | MCAODC_03085 | 0.57 | +0.7 |
626,975 | + | pmrB | MCAODC_03085 | 0.58 | -0.9 |
626,975 | + | pmrB | MCAODC_03085 | 0.58 | +0.9 |
626,975 | + | pmrB | MCAODC_03085 | 0.58 | -0.5 |
627,007 | + | pmrB | MCAODC_03085 | 0.61 | +0.9 |
627,007 | + | pmrB | MCAODC_03085 | 0.61 | -1.6 |
627,022 | - | pmrB | MCAODC_03085 | 0.62 | -0.3 |
627,054 | - | pmrB | MCAODC_03085 | 0.65 | -0.2 |
627,113 | + | pmrB | MCAODC_03085 | 0.71 | +0.1 |
627,168 | + | pmrB | MCAODC_03085 | 0.76 | -0.6 |
627,169 | - | pmrB | MCAODC_03085 | 0.76 | -0.0 |
627,169 | - | pmrB | MCAODC_03085 | 0.76 | +0.0 |
627,174 | + | pmrB | MCAODC_03085 | 0.76 | +1.5 |
627,228 | + | pmrB | MCAODC_03085 | 0.81 | +0.8 |
627,240 | + | pmrB | MCAODC_03085 | 0.82 | +0.5 |
627,240 | + | pmrB | MCAODC_03085 | 0.82 | -0.5 |
627,258 | + | pmrB | MCAODC_03085 | 0.84 | +0.4 |
627,259 | - | pmrB | MCAODC_03085 | 0.84 | +0.7 |
627,269 | + | pmrB | MCAODC_03085 | 0.85 | -0.3 |
627,269 | + | pmrB | MCAODC_03085 | 0.85 | -0.7 |
627,270 | - | pmrB | MCAODC_03085 | 0.85 | +1.1 |
627,273 | + | pmrB | MCAODC_03085 | 0.85 | +0.8 |
627,273 | + | pmrB | MCAODC_03085 | 0.85 | +0.2 |
627,273 | + | pmrB | MCAODC_03085 | 0.85 | -0.7 |
627,274 | - | pmrB | MCAODC_03085 | 0.85 | +0.6 |
627,308 | + | pmrB | MCAODC_03085 | 0.88 | -4.9 |
627,312 | + | pmrB | MCAODC_03085 | 0.89 | +2.0 |
627,312 | + | pmrB | MCAODC_03085 | 0.89 | +0.0 |
627,312 | + | pmrB | MCAODC_03085 | 0.89 | -1.0 |
627,313 | - | pmrB | MCAODC_03085 | 0.89 | -0.5 |
627,327 | + | +0.4 | |||
627,327 | + | +1.3 | |||
627,328 | - | -2.4 | |||
627,431 | + | +0.8 | |||
627,431 | + | -0.1 | |||
627,433 | + | -0.0 | |||
627,433 | + | -0.6 | |||
627,433 | + | -0.5 | |||
627,434 | - | -0.4 | |||
627,434 | - | +1.5 | |||
627,434 | - | -0.1 | |||
627,434 | - | -0.5 | |||
627,434 | - | -1.5 | |||
627,470 | + | pmrR | MCAODC_03095 | 0.66 | -0.6 |
627,470 | + | pmrR | MCAODC_03095 | 0.66 | -0.4 |
627,474 | + | pmrR | MCAODC_03095 | 0.70 | -0.3 |
627,474 | + | pmrR | MCAODC_03095 | 0.70 | +0.8 |
627,484 | + | pmrR | MCAODC_03095 | 0.81 | -0.5 |
627,484 | + | pmrR | MCAODC_03095 | 0.81 | +1.3 |
627,484 | + | pmrR | MCAODC_03095 | 0.81 | +0.1 |
627,484 | + | pmrR | MCAODC_03095 | 0.81 | -0.7 |
627,547 | + | -0.2 | |||
627,548 | - | +0.7 | |||
627,558 | + | -2.7 | |||
627,559 | - | +0.6 | |||
627,559 | - | +0.8 | |||
627,589 | + | +1.1 | |||
627,589 | + | -1.4 | |||
627,590 | - | -0.8 | |||
627,614 | - | -0.1 | |||
627,614 | - | +0.0 | |||
627,686 | + | -1.5 | |||
627,686 | + | -2.0 | |||
627,687 | - | +0.0 | |||
627,687 | - | -0.2 | |||
627,747 | + | -1.4 | |||
627,748 | - | -0.6 | |||
627,749 | + | -1.9 | |||
627,750 | - | +0.2 | |||
627,750 | - | -1.8 | |||
627,837 | + | proP | MCAODC_03100 | 0.15 | +0.3 |
627,838 | - | proP | MCAODC_03100 | 0.15 | +0.2 |
627,847 | + | proP | MCAODC_03100 | 0.16 | +0.6 |
627,847 | + | proP | MCAODC_03100 | 0.16 | -3.7 |
627,847 | + | proP | MCAODC_03100 | 0.16 | +0.7 |
627,850 | + | proP | MCAODC_03100 | 0.16 | +0.2 |
627,851 | - | proP | MCAODC_03100 | 0.16 | +0.7 |
627,851 | - | proP | MCAODC_03100 | 0.16 | -0.4 |
627,935 | + | proP | MCAODC_03100 | 0.21 | -1.5 |
627,992 | + | proP | MCAODC_03100 | 0.25 | -0.9 |
627,992 | + | proP | MCAODC_03100 | 0.25 | +0.5 |
627,992 | + | proP | MCAODC_03100 | 0.25 | -0.9 |
627,992 | + | proP | MCAODC_03100 | 0.25 | -0.0 |
627,993 | - | proP | MCAODC_03100 | 0.25 | -0.5 |
628,010 | + | proP | MCAODC_03100 | 0.26 | +0.8 |
628,086 | - | proP | MCAODC_03100 | 0.32 | +0.4 |
628,086 | - | proP | MCAODC_03100 | 0.32 | +1.1 |
628,121 | + | proP | MCAODC_03100 | 0.34 | +1.1 |
628,122 | - | proP | MCAODC_03100 | 0.34 | -0.2 |
628,128 | + | proP | MCAODC_03100 | 0.34 | +1.6 |
628,128 | + | proP | MCAODC_03100 | 0.34 | +0.7 |
628,128 | + | proP | MCAODC_03100 | 0.34 | +0.6 |
628,129 | - | proP | MCAODC_03100 | 0.34 | +2.0 |
628,129 | - | proP | MCAODC_03100 | 0.34 | -1.0 |
628,193 | + | proP | MCAODC_03100 | 0.39 | -1.9 |
628,194 | - | proP | MCAODC_03100 | 0.39 | -0.8 |
628,214 | + | proP | MCAODC_03100 | 0.40 | -0.5 |
628,214 | + | proP | MCAODC_03100 | 0.40 | +1.3 |
628,240 | + | proP | MCAODC_03100 | 0.42 | +0.3 |
628,240 | + | proP | MCAODC_03100 | 0.42 | +1.1 |
628,241 | - | proP | MCAODC_03100 | 0.42 | +1.3 |
628,271 | + | proP | MCAODC_03100 | 0.44 | -5.3 |
628,272 | - | proP | MCAODC_03100 | 0.44 | +0.6 |
628,272 | - | proP | MCAODC_03100 | 0.44 | +0.3 |
628,273 | + | proP | MCAODC_03100 | 0.44 | +0.5 |
628,273 | + | proP | MCAODC_03100 | 0.44 | -0.2 |
628,273 | + | proP | MCAODC_03100 | 0.44 | -0.1 |
628,273 | + | proP | MCAODC_03100 | 0.44 | -0.8 |
628,274 | - | proP | MCAODC_03100 | 0.44 | -1.0 |
628,274 | - | proP | MCAODC_03100 | 0.44 | -0.8 |
628,274 | - | proP | MCAODC_03100 | 0.44 | -3.2 |
628,274 | - | proP | MCAODC_03100 | 0.44 | +0.4 |
628,274 | - | proP | MCAODC_03100 | 0.44 | +0.5 |
628,288 | + | proP | MCAODC_03100 | 0.45 | +1.6 |
628,288 | + | proP | MCAODC_03100 | 0.45 | +0.2 |
628,288 | + | proP | MCAODC_03100 | 0.45 | +2.1 |
628,288 | + | proP | MCAODC_03100 | 0.45 | -2.4 |
628,288 | + | proP | MCAODC_03100 | 0.45 | -3.8 |
628,289 | - | proP | MCAODC_03100 | 0.45 | -1.3 |
628,289 | - | proP | MCAODC_03100 | 0.45 | +0.5 |
628,289 | - | proP | MCAODC_03100 | 0.45 | +0.8 |
628,289 | - | proP | MCAODC_03100 | 0.45 | -0.1 |
628,289 | - | proP | MCAODC_03100 | 0.45 | +0.6 |
628,289 | - | proP | MCAODC_03100 | 0.45 | +1.1 |
628,291 | + | proP | MCAODC_03100 | 0.45 | -1.5 |
628,291 | + | proP | MCAODC_03100 | 0.45 | -0.3 |
628,291 | + | proP | MCAODC_03100 | 0.45 | -0.4 |
628,292 | - | proP | MCAODC_03100 | 0.45 | +1.7 |
628,292 | - | proP | MCAODC_03100 | 0.45 | -0.2 |
628,292 | - | proP | MCAODC_03100 | 0.45 | +0.5 |
628,292 | - | proP | MCAODC_03100 | 0.45 | +0.8 |
628,292 | - | proP | MCAODC_03100 | 0.45 | +1.4 |
628,292 | - | proP | MCAODC_03100 | 0.45 | -0.7 |
628,312 | - | proP | MCAODC_03100 | 0.47 | -0.3 |
628,320 | + | proP | MCAODC_03100 | 0.47 | +0.5 |
628,322 | + | proP | MCAODC_03100 | 0.47 | -0.1 |
628,322 | + | proP | MCAODC_03100 | 0.47 | -2.3 |
628,322 | + | proP | MCAODC_03100 | 0.47 | -0.8 |
628,322 | + | proP | MCAODC_03100 | 0.47 | +0.1 |
628,322 | + | proP | MCAODC_03100 | 0.47 | +0.8 |
628,322 | + | proP | MCAODC_03100 | 0.47 | +1.2 |
628,323 | - | proP | MCAODC_03100 | 0.47 | -1.9 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +0.8 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +0.6 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +0.7 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +0.4 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +0.9 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +0.1 |
628,323 | - | proP | MCAODC_03100 | 0.47 | -2.1 |
628,323 | - | proP | MCAODC_03100 | 0.47 | -0.4 |
628,323 | - | proP | MCAODC_03100 | 0.47 | +1.2 |
628,323 | - | proP | MCAODC_03100 | 0.47 | -2.6 |
628,323 | - | proP | MCAODC_03100 | 0.47 | -0.7 |
628,323 | - | proP | MCAODC_03100 | 0.47 | -0.1 |
628,345 | + | proP | MCAODC_03100 | 0.49 | -0.2 |
628,468 | + | proP | MCAODC_03100 | 0.57 | -1.2 |
628,468 | + | proP | MCAODC_03100 | 0.57 | -0.2 |
628,469 | - | proP | MCAODC_03100 | 0.57 | +0.6 |
628,469 | - | proP | MCAODC_03100 | 0.57 | +0.1 |
628,512 | - | proP | MCAODC_03100 | 0.60 | -1.0 |
628,561 | - | proP | MCAODC_03100 | 0.63 | -0.2 |
628,598 | + | proP | MCAODC_03100 | 0.66 | -0.2 |
628,598 | + | proP | MCAODC_03100 | 0.66 | -0.7 |
628,681 | + | proP | MCAODC_03100 | 0.71 | +0.7 |
628,715 | + | proP | MCAODC_03100 | 0.73 | +0.3 |
628,716 | - | proP | MCAODC_03100 | 0.73 | -0.9 |
628,716 | - | proP | MCAODC_03100 | 0.73 | +0.1 |
628,716 | - | proP | MCAODC_03100 | 0.73 | -3.8 |
628,745 | + | proP | MCAODC_03100 | 0.75 | -0.4 |
628,745 | + | proP | MCAODC_03100 | 0.75 | -0.4 |
628,745 | + | proP | MCAODC_03100 | 0.75 | +1.3 |
628,746 | - | proP | MCAODC_03100 | 0.75 | -0.2 |
628,746 | - | proP | MCAODC_03100 | 0.75 | -0.6 |
628,746 | - | proP | MCAODC_03100 | 0.75 | -0.5 |
628,760 | - | proP | MCAODC_03100 | 0.76 | -0.3 |
628,760 | - | proP | MCAODC_03100 | 0.76 | +0.4 |
628,770 | + | proP | MCAODC_03100 | 0.77 | -1.1 |
628,770 | + | proP | MCAODC_03100 | 0.77 | -1.9 |
628,771 | - | proP | MCAODC_03100 | 0.77 | -0.7 |
628,778 | + | proP | MCAODC_03100 | 0.78 | -1.7 |
628,779 | - | proP | MCAODC_03100 | 0.78 | +0.5 |
628,799 | + | proP | MCAODC_03100 | 0.79 | -0.2 |
628,800 | - | proP | MCAODC_03100 | 0.79 | +0.9 |
628,837 | + | proP | MCAODC_03100 | 0.82 | -0.1 |
628,837 | + | proP | MCAODC_03100 | 0.82 | -0.5 |
628,837 | + | proP | MCAODC_03100 | 0.82 | -0.1 |
628,837 | + | proP | MCAODC_03100 | 0.82 | -1.2 |
628,837 | + | proP | MCAODC_03100 | 0.82 | -3.4 |
628,837 | + | proP | MCAODC_03100 | 0.82 | -0.0 |
628,837 | + | proP | MCAODC_03100 | 0.82 | +1.0 |
628,838 | - | proP | MCAODC_03100 | 0.82 | +0.1 |
628,838 | - | proP | MCAODC_03100 | 0.82 | -0.1 |
628,838 | - | proP | MCAODC_03100 | 0.82 | -0.6 |
628,838 | - | proP | MCAODC_03100 | 0.82 | +0.0 |
628,853 | + | proP | MCAODC_03100 | 0.83 | -2.1 |
628,853 | + | proP | MCAODC_03100 | 0.83 | +0.3 |
628,962 | + | proP | MCAODC_03100 | 0.90 | +0.8 |
628,962 | + | proP | MCAODC_03100 | 0.90 | +0.4 |
628,963 | - | proP | MCAODC_03100 | 0.90 | +1.0 |
628,963 | - | proP | MCAODC_03100 | 0.90 | +2.2 |
628,969 | + | -1.4 | |||
628,969 | + | +2.3 | |||
628,985 | - | -3.6 | |||
628,985 | - | +0.3 | |||
629,043 | - | -2.9 | |||
629,051 | + | +0.9 | |||
629,052 | - | -1.1 | |||
629,052 | - | -1.7 | |||
629,063 | + | +0.1 | |||
629,063 | + | +0.1 | |||
629,064 | - | -0.4 | |||
629,084 | + | +2.1 | |||
629,114 | + | -0.4 | |||
629,115 | - | -2.7 | |||
629,212 | - | -2.5 | |||
629,212 | - | -1.5 | |||
629,220 | + | +1.1 | |||
629,233 | + | +1.4 | |||
629,233 | + | -1.2 | |||
629,234 | - | -0.3 | |||
629,234 | - | -0.5 | |||
629,234 | - | -2.0 | |||
629,255 | + | -2.2 | |||
629,255 | + | -0.5 | |||
629,290 | + | -1.1 | |||
629,376 | - | +1.1 | |||
629,379 | + | -1.4 | |||
629,506 | + | yjcZ | MCAODC_03105 | 0.15 | -0.4 |
629,507 | - | yjcZ | MCAODC_03105 | 0.15 | -1.3 |
629,507 | - | yjcZ | MCAODC_03105 | 0.15 | +0.3 |
629,507 | - | yjcZ | MCAODC_03105 | 0.15 | -0.8 |
629,507 | - | yjcZ | MCAODC_03105 | 0.15 | -1.9 |
629,595 | + | yjcZ | MCAODC_03105 | 0.25 | -0.4 |
629,595 | + | yjcZ | MCAODC_03105 | 0.25 | +0.8 |
629,595 | + | yjcZ | MCAODC_03105 | 0.25 | +0.2 |
629,596 | - | yjcZ | MCAODC_03105 | 0.25 | -0.2 |
629,596 | - | yjcZ | MCAODC_03105 | 0.25 | +2.3 |
629,598 | + | yjcZ | MCAODC_03105 | 0.25 | -0.3 |
629,598 | + | yjcZ | MCAODC_03105 | 0.25 | -0.5 |
629,599 | - | yjcZ | MCAODC_03105 | 0.25 | +1.6 |
629,626 | + | yjcZ | MCAODC_03105 | 0.28 | +1.6 |
629,626 | + | yjcZ | MCAODC_03105 | 0.28 | -1.0 |
629,627 | - | yjcZ | MCAODC_03105 | 0.28 | -0.1 |
629,627 | - | yjcZ | MCAODC_03105 | 0.28 | +0.5 |
629,781 | + | yjcZ | MCAODC_03105 | 0.46 | -3.2 |
629,781 | + | yjcZ | MCAODC_03105 | 0.46 | +2.3 |
629,781 | + | yjcZ | MCAODC_03105 | 0.46 | -0.5 |
629,781 | + | yjcZ | MCAODC_03105 | 0.46 | +0.1 |
629,782 | - | yjcZ | MCAODC_03105 | 0.46 | +0.1 |
629,898 | + | yjcZ | MCAODC_03105 | 0.59 | +0.8 |
629,898 | + | yjcZ | MCAODC_03105 | 0.59 | -0.7 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | -3.3 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | +0.8 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | -1.1 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | +1.2 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | -0.8 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | +0.2 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | -2.0 |
629,899 | - | yjcZ | MCAODC_03105 | 0.59 | +0.7 |
630,055 | + | yjcZ | MCAODC_03105 | 0.77 | +0.0 |
630,055 | + | yjcZ | MCAODC_03105 | 0.77 | +0.7 |
630,056 | - | yjcZ | MCAODC_03105 | 0.77 | +0.5 |
Or see this region's nucleotide sequence