Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaG and ulaR are separated by 107 nucleotides ulaR and yjfP overlap by 4 nucleotides yjfP and bsmA are separated by 181 nucleotides bsmA and yjfN are separated by 148 nucleotides
MCAODC_02670: ulaG - L-ascorbate 6-phosphate lactonase, at 540,713 to 541,777
ulaG
MCAODC_02675: ulaR - HTH-type transcriptional regulator UlaR, at 541,885 to 542,640
ulaR
MCAODC_02680: yjfP - esterase, at 542,637 to 543,386
yjfP
MCAODC_02685: bsmA - biofilm peroxide resistance protein BsmA, at 543,568 to 543,897
bsmA
MCAODC_02690: yjfN - protease activator YjfN, at 544,046 to 544,321
yjfN
Position (kb) 542
543
544 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 541.652 kb on - strand, within ulaG at 541.676 kb on - strand at 541.706 kb on + strand at 541.706 kb on + strand at 541.776 kb on - strand at 541.787 kb on + strand at 541.790 kb on - strand at 541.796 kb on + strand at 541.825 kb on + strand at 541.826 kb on - strand at 541.828 kb on + strand at 541.828 kb on + strand at 541.829 kb on - strand at 541.829 kb on - strand at 542.007 kb on + strand, within ulaR at 542.007 kb on + strand, within ulaR at 542.059 kb on - strand, within ulaR at 542.059 kb on - strand, within ulaR at 542.127 kb on - strand, within ulaR at 542.130 kb on + strand, within ulaR at 542.157 kb on + strand, within ulaR at 542.247 kb on + strand, within ulaR at 542.252 kb on - strand, within ulaR at 542.255 kb on + strand, within ulaR at 542.304 kb on + strand, within ulaR at 542.317 kb on + strand, within ulaR at 542.371 kb on + strand, within ulaR at 542.391 kb on + strand, within ulaR at 542.426 kb on - strand, within ulaR at 542.427 kb on + strand, within ulaR at 542.428 kb on - strand, within ulaR at 542.502 kb on + strand, within ulaR at 542.638 kb on + strand at 542.638 kb on + strand at 542.687 kb on + strand at 542.688 kb on - strand at 542.732 kb on + strand, within yjfP at 542.770 kb on - strand, within yjfP at 542.820 kb on + strand, within yjfP at 542.821 kb on - strand, within yjfP at 542.835 kb on - strand, within yjfP at 542.835 kb on - strand, within yjfP at 542.957 kb on + strand, within yjfP at 542.957 kb on + strand, within yjfP at 542.958 kb on - strand, within yjfP at 542.958 kb on - strand, within yjfP at 542.962 kb on + strand, within yjfP at 542.987 kb on + strand, within yjfP at 542.987 kb on + strand, within yjfP at 543.105 kb on + strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.126 kb on - strand, within yjfP at 543.132 kb on + strand, within yjfP at 543.132 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.254 kb on - strand, within yjfP at 543.254 kb on - strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.278 kb on + strand, within yjfP at 543.279 kb on - strand, within yjfP at 543.279 kb on - strand, within yjfP at 543.335 kb on - strand at 543.343 kb on - strand at 543.353 kb on + strand at 543.353 kb on + strand at 543.353 kb on + strand at 543.375 kb on + strand at 543.376 kb on - strand at 543.409 kb on - strand at 543.409 kb on - strand at 543.452 kb on + strand at 543.452 kb on + strand at 543.452 kb on + strand at 543.453 kb on - strand at 543.453 kb on - strand at 543.459 kb on + strand at 543.459 kb on + strand at 543.459 kb on + strand at 543.460 kb on - strand at 543.478 kb on - strand at 543.518 kb on + strand at 543.546 kb on + strand at 543.546 kb on + strand at 543.546 kb on + strand at 543.547 kb on - strand at 543.555 kb on - strand at 543.562 kb on + strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.567 kb on + strand at 543.568 kb on - strand at 543.568 kb on - strand at 543.573 kb on + strand at 543.585 kb on + strand at 543.585 kb on + strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.588 kb on + strand at 543.588 kb on + strand at 543.588 kb on + strand at 543.589 kb on - strand at 543.589 kb on - strand at 543.589 kb on - strand at 543.594 kb on + strand at 543.594 kb on + strand at 543.594 kb on + strand at 543.595 kb on - strand at 543.595 kb on - strand at 543.599 kb on - strand at 543.614 kb on + strand, within bsmA at 543.615 kb on - strand, within bsmA at 543.617 kb on + strand, within bsmA at 543.617 kb on + strand, within bsmA at 543.618 kb on - strand, within bsmA at 543.618 kb on - strand, within bsmA at 543.632 kb on + strand, within bsmA at 543.632 kb on + strand, within bsmA at 543.633 kb on - strand, within bsmA at 543.633 kb on - strand, within bsmA at 543.642 kb on + strand, within bsmA at 543.643 kb on - strand, within bsmA at 543.657 kb on + strand, within bsmA at 543.657 kb on + strand, within bsmA at 543.662 kb on + strand, within bsmA at 543.663 kb on - strand, within bsmA at 543.725 kb on + strand, within bsmA at 543.734 kb on + strand, within bsmA at 543.738 kb on + strand, within bsmA at 543.743 kb on + strand, within bsmA at 543.743 kb on + strand, within bsmA at 543.744 kb on - strand, within bsmA at 543.744 kb on - strand, within bsmA at 543.744 kb on - strand, within bsmA at 543.779 kb on + strand, within bsmA at 543.820 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.824 kb on - strand, within bsmA at 543.824 kb on - strand, within bsmA at 543.869 kb on - strand at 543.891 kb on + strand at 543.891 kb on + strand at 543.895 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.913 kb on + strand at 543.913 kb on + strand at 543.913 kb on + strand at 543.913 kb on + strand at 543.914 kb on - strand at 543.914 kb on - strand at 543.923 kb on + strand at 543.923 kb on + strand at 543.923 kb on + strand at 543.924 kb on - strand at 543.924 kb on - strand at 543.924 kb on - strand at 543.962 kb on + strand at 543.963 kb on - strand at 543.963 kb on - strand at 543.963 kb on - strand at 543.963 kb on - strand at 543.990 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.057 kb on - strand at 544.057 kb on - strand at 544.057 kb on - strand at 544.081 kb on - strand, within yjfN at 544.089 kb on - strand, within yjfN at 544.089 kb on - strand, within yjfN at 544.159 kb on - strand, within yjfN at 544.181 kb on - strand, within yjfN at 544.181 kb on - strand, within yjfN at 544.181 kb on - strand, within yjfN at 544.258 kb on + strand, within yjfN at 544.259 kb on - strand, within yjfN at 544.259 kb on - strand, within yjfN at 544.262 kb on - strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.269 kb on - strand, within yjfN at 544.269 kb on - strand, within yjfN at 544.288 kb on + strand, within yjfN at 544.289 kb on - strand, within yjfN at 544.309 kb on - strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.314 kb on - strand at 544.314 kb on - strand at 544.330 kb on + strand at 544.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 541,652 - ulaG MCAODC_02670 0.88 -2.1 541,676 - -1.5 541,706 + +0.0 541,706 + +1.0 541,776 - -0.5 541,787 + -0.1 541,790 - -0.0 541,796 + +0.1 541,825 + -0.1 541,826 - +1.2 541,828 + -0.1 541,828 + -1.3 541,829 - -0.1 541,829 - +0.4 542,007 + ulaR MCAODC_02675 0.16 -1.8 542,007 + ulaR MCAODC_02675 0.16 -0.2 542,059 - ulaR MCAODC_02675 0.23 +2.7 542,059 - ulaR MCAODC_02675 0.23 -0.6 542,127 - ulaR MCAODC_02675 0.32 -1.5 542,130 + ulaR MCAODC_02675 0.32 +0.3 542,157 + ulaR MCAODC_02675 0.36 -1.0 542,247 + ulaR MCAODC_02675 0.48 -4.2 542,252 - ulaR MCAODC_02675 0.49 +0.0 542,255 + ulaR MCAODC_02675 0.49 +0.7 542,304 + ulaR MCAODC_02675 0.55 +1.4 542,317 + ulaR MCAODC_02675 0.57 +0.2 542,371 + ulaR MCAODC_02675 0.64 -1.0 542,391 + ulaR MCAODC_02675 0.67 +1.1 542,426 - ulaR MCAODC_02675 0.72 +2.2 542,427 + ulaR MCAODC_02675 0.72 +0.2 542,428 - ulaR MCAODC_02675 0.72 -1.1 542,502 + ulaR MCAODC_02675 0.82 +1.7 542,638 + -1.8 542,638 + +0.1 542,687 + -2.7 542,688 - +0.4 542,732 + yjfP MCAODC_02680 0.13 +1.6 542,770 - yjfP MCAODC_02680 0.18 -0.1 542,820 + yjfP MCAODC_02680 0.24 +0.2 542,821 - yjfP MCAODC_02680 0.25 -0.3 542,835 - yjfP MCAODC_02680 0.26 +1.0 542,835 - yjfP MCAODC_02680 0.26 +1.3 542,957 + yjfP MCAODC_02680 0.43 -0.6 542,957 + yjfP MCAODC_02680 0.43 -0.1 542,958 - yjfP MCAODC_02680 0.43 -2.6 542,958 - yjfP MCAODC_02680 0.43 +0.1 542,962 + yjfP MCAODC_02680 0.43 -0.7 542,987 + yjfP MCAODC_02680 0.47 +1.3 542,987 + yjfP MCAODC_02680 0.47 -2.1 543,105 + yjfP MCAODC_02680 0.62 -0.8 543,106 - yjfP MCAODC_02680 0.63 -0.7 543,106 - yjfP MCAODC_02680 0.63 +1.6 543,106 - yjfP MCAODC_02680 0.63 +0.1 543,125 + yjfP MCAODC_02680 0.65 +0.4 543,125 + yjfP MCAODC_02680 0.65 +0.6 543,125 + yjfP MCAODC_02680 0.65 +0.5 543,126 - yjfP MCAODC_02680 0.65 -1.1 543,132 + yjfP MCAODC_02680 0.66 +0.3 543,132 + yjfP MCAODC_02680 0.66 -3.3 543,253 + yjfP MCAODC_02680 0.82 -0.3 543,253 + yjfP MCAODC_02680 0.82 +0.3 543,253 + yjfP MCAODC_02680 0.82 +0.1 543,254 - yjfP MCAODC_02680 0.82 +0.0 543,254 - yjfP MCAODC_02680 0.82 -0.0 543,257 + yjfP MCAODC_02680 0.83 -0.1 543,257 + yjfP MCAODC_02680 0.83 -2.7 543,257 + yjfP MCAODC_02680 0.83 -0.0 543,257 + yjfP MCAODC_02680 0.83 +1.5 543,257 + yjfP MCAODC_02680 0.83 -0.0 543,258 - yjfP MCAODC_02680 0.83 +0.8 543,258 - yjfP MCAODC_02680 0.83 +1.4 543,258 - yjfP MCAODC_02680 0.83 +0.5 543,258 - yjfP MCAODC_02680 0.83 -0.8 543,258 - yjfP MCAODC_02680 0.83 -0.7 543,258 - yjfP MCAODC_02680 0.83 +0.9 543,258 - yjfP MCAODC_02680 0.83 -1.6 543,258 - yjfP MCAODC_02680 0.83 -1.0 543,259 + yjfP MCAODC_02680 0.83 +2.0 543,259 + yjfP MCAODC_02680 0.83 -1.1 543,259 + yjfP MCAODC_02680 0.83 +0.3 543,259 + yjfP MCAODC_02680 0.83 -0.4 543,260 - yjfP MCAODC_02680 0.83 -0.2 543,260 - yjfP MCAODC_02680 0.83 +0.6 543,260 - yjfP MCAODC_02680 0.83 -1.4 543,260 - yjfP MCAODC_02680 0.83 -1.0 543,260 - yjfP MCAODC_02680 0.83 -0.9 543,260 - yjfP MCAODC_02680 0.83 +0.6 543,260 - yjfP MCAODC_02680 0.83 -1.2 543,260 - yjfP MCAODC_02680 0.83 -1.4 543,278 + yjfP MCAODC_02680 0.85 -0.5 543,279 - yjfP MCAODC_02680 0.86 +1.2 543,279 - yjfP MCAODC_02680 0.86 -0.0 543,335 - -4.7 543,343 - +0.1 543,353 + -0.2 543,353 + +0.2 543,353 + +0.2 543,375 + -1.3 543,376 - -1.4 543,409 - -0.7 543,409 - +1.3 543,452 + -2.3 543,452 + -1.3 543,452 + +0.7 543,453 - -0.6 543,453 - -0.1 543,459 + -1.1 543,459 + +1.0 543,459 + +0.8 543,460 - +0.2 543,478 - -4.4 543,518 + -0.4 543,546 + +1.2 543,546 + -2.1 543,546 + -0.5 543,547 - +2.4 543,555 - -2.7 543,562 + -0.3 543,563 - -1.0 543,563 - +1.3 543,563 - -1.6 543,567 + +1.2 543,568 - -1.9 543,568 - -0.6 543,573 + +0.2 543,585 + -3.7 543,585 + -3.3 543,586 - -0.5 543,586 - +0.7 543,586 - -0.8 543,586 - -0.6 543,588 + +0.4 543,588 + -0.0 543,588 + +0.4 543,589 - +0.5 543,589 - +1.2 543,589 - -2.9 543,594 + +0.3 543,594 + +0.2 543,594 + -2.0 543,595 - +0.2 543,595 - -0.1 543,599 - -1.6 543,614 + bsmA MCAODC_02685 0.14 +0.3 543,615 - bsmA MCAODC_02685 0.14 -2.5 543,617 + bsmA MCAODC_02685 0.15 +0.0 543,617 + bsmA MCAODC_02685 0.15 +0.7 543,618 - bsmA MCAODC_02685 0.15 -0.3 543,618 - bsmA MCAODC_02685 0.15 -1.9 543,632 + bsmA MCAODC_02685 0.19 +0.5 543,632 + bsmA MCAODC_02685 0.19 -0.1 543,633 - bsmA MCAODC_02685 0.20 +0.8 543,633 - bsmA MCAODC_02685 0.20 +0.1 543,642 + bsmA MCAODC_02685 0.22 +1.8 543,643 - bsmA MCAODC_02685 0.23 -2.5 543,657 + bsmA MCAODC_02685 0.27 +0.0 543,657 + bsmA MCAODC_02685 0.27 -0.2 543,662 + bsmA MCAODC_02685 0.28 +0.6 543,663 - bsmA MCAODC_02685 0.29 +1.7 543,725 + bsmA MCAODC_02685 0.48 -1.3 543,734 + bsmA MCAODC_02685 0.50 -0.5 543,738 + bsmA MCAODC_02685 0.52 +0.7 543,743 + bsmA MCAODC_02685 0.53 -1.6 543,743 + bsmA MCAODC_02685 0.53 -0.8 543,744 - bsmA MCAODC_02685 0.53 -0.9 543,744 - bsmA MCAODC_02685 0.53 -0.1 543,744 - bsmA MCAODC_02685 0.53 +1.1 543,779 + bsmA MCAODC_02685 0.64 -1.9 543,820 + bsmA MCAODC_02685 0.76 -1.3 543,823 + bsmA MCAODC_02685 0.77 -0.5 543,823 + bsmA MCAODC_02685 0.77 +0.6 543,823 + bsmA MCAODC_02685 0.77 -0.3 543,823 + bsmA MCAODC_02685 0.77 -0.8 543,824 - bsmA MCAODC_02685 0.78 -1.1 543,824 - bsmA MCAODC_02685 0.78 -0.6 543,869 - -0.3 543,891 + -0.2 543,891 + +0.7 543,895 + -0.0 543,909 + +0.9 543,909 + +1.2 543,909 + -1.1 543,909 + +1.5 543,909 + -0.0 543,909 + +0.2 543,909 + -1.6 543,909 + -0.7 543,909 + +0.3 543,909 + +0.6 543,909 + -1.0 543,909 + +0.5 543,909 + -0.1 543,909 + +0.0 543,909 + -0.3 543,910 - -0.7 543,910 - +0.8 543,910 - +0.6 543,910 - -0.9 543,910 - +1.3 543,910 - +2.3 543,910 - +0.4 543,910 - -0.7 543,910 - +0.8 543,910 - -0.5 543,913 + -2.7 543,913 + +1.3 543,913 + -2.3 543,913 + +0.6 543,914 - -0.6 543,914 - -2.5 543,923 + +1.9 543,923 + -0.6 543,923 + -0.1 543,924 - +1.9 543,924 - -0.7 543,924 - -0.7 543,962 + -2.7 543,963 - -0.4 543,963 - +0.2 543,963 - -0.5 543,963 - -0.3 543,990 + +0.1 544,056 + +1.2 544,056 + -0.8 544,056 + +0.4 544,056 + -0.6 544,056 + +1.3 544,057 - -0.6 544,057 - -1.0 544,057 - -0.1 544,081 - yjfN MCAODC_02690 0.13 +0.8 544,089 - yjfN MCAODC_02690 0.16 +4.1 544,089 - yjfN MCAODC_02690 0.16 -0.2 544,159 - yjfN MCAODC_02690 0.41 -1.9 544,181 - yjfN MCAODC_02690 0.49 -0.3 544,181 - yjfN MCAODC_02690 0.49 +0.1 544,181 - yjfN MCAODC_02690 0.49 +0.3 544,258 + yjfN MCAODC_02690 0.77 +0.8 544,259 - yjfN MCAODC_02690 0.77 -1.0 544,259 - yjfN MCAODC_02690 0.77 +0.4 544,262 - yjfN MCAODC_02690 0.78 +0.3 544,268 + yjfN MCAODC_02690 0.80 -0.0 544,268 + yjfN MCAODC_02690 0.80 -0.7 544,268 + yjfN MCAODC_02690 0.80 -0.2 544,268 + yjfN MCAODC_02690 0.80 +3.4 544,269 - yjfN MCAODC_02690 0.81 -1.4 544,269 - yjfN MCAODC_02690 0.81 +0.2 544,288 + yjfN MCAODC_02690 0.88 -0.1 544,289 - yjfN MCAODC_02690 0.88 +0.8 544,309 - +0.7 544,313 + -0.8 544,313 + +1.9 544,313 + -0.7 544,313 + -0.3 544,313 + -0.0 544,313 + +0.8 544,314 - +1.2 544,314 - +0.3 544,330 + -0.1 544,331 - +0.6
Or see this region's nucleotide sequence