Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02345 and tabA are separated by 122 nucleotides tabA and bdcR are separated by 144 nucleotides bdcR and bdcA are separated by 70 nucleotides
MCAODC_02345: MCAODC_02345 - Uncharacterized protein YjgL, at 481,371 to 483,107
_02345
MCAODC_02350: tabA - toxin-antitoxin biofilm protein TabA, at 483,230 to 483,682
tabA
MCAODC_02355: bdcR - HTH-type transcriptional repressor BdcR, at 483,827 to 484,420
bdcR
MCAODC_02360: bdcA - SDR family oxidoreductase, at 484,491 to 485,204
bdcA
Position (kb) 483
484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 482.259 kb on + strand, within MCAODC_02345 at 482.279 kb on + strand, within MCAODC_02345 at 482.279 kb on + strand, within MCAODC_02345 at 482.317 kb on - strand, within MCAODC_02345 at 482.325 kb on + strand, within MCAODC_02345 at 482.460 kb on + strand, within MCAODC_02345 at 482.547 kb on - strand, within MCAODC_02345 at 482.729 kb on + strand, within MCAODC_02345 at 483.137 kb on + strand at 483.212 kb on - strand at 483.298 kb on + strand, within tabA at 483.347 kb on - strand, within tabA at 483.399 kb on - strand, within tabA at 483.484 kb on - strand, within tabA at 483.495 kb on + strand, within tabA at 483.529 kb on + strand, within tabA at 483.546 kb on + strand, within tabA at 483.546 kb on + strand, within tabA at 483.613 kb on + strand, within tabA at 483.613 kb on + strand, within tabA at 483.613 kb on + strand, within tabA at 483.614 kb on - strand, within tabA at 483.614 kb on - strand, within tabA at 483.633 kb on - strand, within tabA at 483.667 kb on + strand at 483.668 kb on - strand at 483.769 kb on - strand at 483.776 kb on + strand at 483.841 kb on + strand at 483.849 kb on - strand at 483.937 kb on + strand, within bdcR at 483.943 kb on + strand, within bdcR at 483.944 kb on - strand, within bdcR at 483.988 kb on + strand, within bdcR at 483.990 kb on + strand, within bdcR at 483.990 kb on + strand, within bdcR at 483.990 kb on + strand, within bdcR at 483.990 kb on + strand, within bdcR at 483.990 kb on + strand, within bdcR at 483.990 kb on + strand, within bdcR at 483.991 kb on - strand, within bdcR at 483.996 kb on + strand, within bdcR at 483.996 kb on + strand, within bdcR at 483.996 kb on + strand, within bdcR at 483.996 kb on + strand, within bdcR at 483.996 kb on + strand, within bdcR at 483.997 kb on - strand, within bdcR at 484.021 kb on - strand, within bdcR at 484.021 kb on - strand, within bdcR at 484.021 kb on - strand, within bdcR at 484.023 kb on + strand, within bdcR at 484.037 kb on - strand, within bdcR at 484.061 kb on - strand, within bdcR at 484.061 kb on - strand, within bdcR at 484.061 kb on - strand, within bdcR at 484.061 kb on - strand, within bdcR at 484.082 kb on - strand, within bdcR at 484.108 kb on + strand, within bdcR at 484.108 kb on + strand, within bdcR at 484.110 kb on + strand, within bdcR at 484.110 kb on + strand, within bdcR at 484.110 kb on + strand, within bdcR at 484.111 kb on - strand, within bdcR at 484.131 kb on - strand, within bdcR at 484.193 kb on - strand, within bdcR at 484.209 kb on + strand, within bdcR at 484.209 kb on + strand, within bdcR at 484.209 kb on + strand, within bdcR at 484.209 kb on + strand, within bdcR at 484.209 kb on + strand, within bdcR at 484.210 kb on - strand, within bdcR at 484.210 kb on - strand, within bdcR at 484.210 kb on - strand, within bdcR at 484.210 kb on - strand, within bdcR at 484.220 kb on + strand, within bdcR at 484.221 kb on - strand, within bdcR at 484.260 kb on + strand, within bdcR at 484.276 kb on + strand, within bdcR at 484.444 kb on + strand at 484.445 kb on - strand at 484.467 kb on + strand at 484.502 kb on + strand at 484.508 kb on + strand at 484.509 kb on - strand at 484.558 kb on + strand at 484.558 kb on + strand at 484.558 kb on + strand at 484.558 kb on + strand at 484.559 kb on - strand at 484.559 kb on - strand at 484.559 kb on - strand at 484.588 kb on + strand, within bdcA at 484.588 kb on + strand, within bdcA at 484.588 kb on + strand, within bdcA at 484.589 kb on - strand, within bdcA at 484.589 kb on - strand, within bdcA at 484.589 kb on - strand, within bdcA at 484.599 kb on + strand, within bdcA at 484.657 kb on + strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.658 kb on - strand, within bdcA at 484.661 kb on + strand, within bdcA at 484.661 kb on + strand, within bdcA at 484.667 kb on + strand, within bdcA at 484.667 kb on + strand, within bdcA at 484.667 kb on + strand, within bdcA at 484.668 kb on - strand, within bdcA at 484.668 kb on - strand, within bdcA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 482,259 + MCAODC_02345 0.51 +1.3 482,279 + MCAODC_02345 0.52 -0.6 482,279 + MCAODC_02345 0.52 +1.4 482,317 - MCAODC_02345 0.54 -1.5 482,325 + MCAODC_02345 0.55 +0.7 482,460 + MCAODC_02345 0.63 -1.0 482,547 - MCAODC_02345 0.68 +0.9 482,729 + MCAODC_02345 0.78 +0.6 483,137 + -2.6 483,212 - -0.5 483,298 + tabA MCAODC_02350 0.15 -3.9 483,347 - tabA MCAODC_02350 0.26 +0.6 483,399 - tabA MCAODC_02350 0.37 -2.1 483,484 - tabA MCAODC_02350 0.56 -0.1 483,495 + tabA MCAODC_02350 0.58 +1.4 483,529 + tabA MCAODC_02350 0.66 +1.0 483,546 + tabA MCAODC_02350 0.70 -0.9 483,546 + tabA MCAODC_02350 0.70 +0.3 483,613 + tabA MCAODC_02350 0.85 +1.0 483,613 + tabA MCAODC_02350 0.85 +0.1 483,613 + tabA MCAODC_02350 0.85 -0.1 483,614 - tabA MCAODC_02350 0.85 +0.3 483,614 - tabA MCAODC_02350 0.85 +0.2 483,633 - tabA MCAODC_02350 0.89 +0.1 483,667 + -0.1 483,668 - +1.9 483,769 - +0.9 483,776 + -2.3 483,841 + -3.1 483,849 - +1.2 483,937 + bdcR MCAODC_02355 0.19 +0.6 483,943 + bdcR MCAODC_02355 0.20 -2.8 483,944 - bdcR MCAODC_02355 0.20 +1.6 483,988 + bdcR MCAODC_02355 0.27 +0.4 483,990 + bdcR MCAODC_02355 0.27 +0.4 483,990 + bdcR MCAODC_02355 0.27 -0.4 483,990 + bdcR MCAODC_02355 0.27 +1.1 483,990 + bdcR MCAODC_02355 0.27 +0.6 483,990 + bdcR MCAODC_02355 0.27 +0.7 483,990 + bdcR MCAODC_02355 0.27 +1.4 483,991 - bdcR MCAODC_02355 0.28 +0.5 483,996 + bdcR MCAODC_02355 0.28 +1.1 483,996 + bdcR MCAODC_02355 0.28 +0.2 483,996 + bdcR MCAODC_02355 0.28 +0.7 483,996 + bdcR MCAODC_02355 0.28 -0.7 483,996 + bdcR MCAODC_02355 0.28 -0.3 483,997 - bdcR MCAODC_02355 0.29 -1.5 484,021 - bdcR MCAODC_02355 0.33 +0.7 484,021 - bdcR MCAODC_02355 0.33 -0.4 484,021 - bdcR MCAODC_02355 0.33 +1.2 484,023 + bdcR MCAODC_02355 0.33 +1.4 484,037 - bdcR MCAODC_02355 0.35 +0.1 484,061 - bdcR MCAODC_02355 0.39 +0.2 484,061 - bdcR MCAODC_02355 0.39 -1.1 484,061 - bdcR MCAODC_02355 0.39 -0.9 484,061 - bdcR MCAODC_02355 0.39 +0.3 484,082 - bdcR MCAODC_02355 0.43 +0.7 484,108 + bdcR MCAODC_02355 0.47 +0.1 484,108 + bdcR MCAODC_02355 0.47 +0.2 484,110 + bdcR MCAODC_02355 0.48 -1.3 484,110 + bdcR MCAODC_02355 0.48 +0.5 484,110 + bdcR MCAODC_02355 0.48 +0.6 484,111 - bdcR MCAODC_02355 0.48 +0.2 484,131 - bdcR MCAODC_02355 0.51 +0.5 484,193 - bdcR MCAODC_02355 0.62 -2.2 484,209 + bdcR MCAODC_02355 0.64 +0.7 484,209 + bdcR MCAODC_02355 0.64 +2.9 484,209 + bdcR MCAODC_02355 0.64 -4.1 484,209 + bdcR MCAODC_02355 0.64 +1.3 484,209 + bdcR MCAODC_02355 0.64 -0.0 484,210 - bdcR MCAODC_02355 0.64 +0.9 484,210 - bdcR MCAODC_02355 0.64 +0.4 484,210 - bdcR MCAODC_02355 0.64 -2.9 484,210 - bdcR MCAODC_02355 0.64 -0.2 484,220 + bdcR MCAODC_02355 0.66 -0.9 484,221 - bdcR MCAODC_02355 0.66 -0.8 484,260 + bdcR MCAODC_02355 0.73 +1.5 484,276 + bdcR MCAODC_02355 0.76 +0.9 484,444 + +0.5 484,445 - +0.4 484,467 + +0.3 484,502 + -1.6 484,508 + +0.7 484,509 - -1.5 484,558 + +0.2 484,558 + -1.2 484,558 + +1.2 484,558 + +0.6 484,559 - -1.1 484,559 - +0.6 484,559 - +0.7 484,588 + bdcA MCAODC_02360 0.14 +0.3 484,588 + bdcA MCAODC_02360 0.14 +1.0 484,588 + bdcA MCAODC_02360 0.14 -1.6 484,589 - bdcA MCAODC_02360 0.14 -0.3 484,589 - bdcA MCAODC_02360 0.14 +2.8 484,589 - bdcA MCAODC_02360 0.14 -0.2 484,599 + bdcA MCAODC_02360 0.15 +0.3 484,657 + bdcA MCAODC_02360 0.23 -0.7 484,658 - bdcA MCAODC_02360 0.23 +0.3 484,658 - bdcA MCAODC_02360 0.23 -0.5 484,658 - bdcA MCAODC_02360 0.23 -0.5 484,658 - bdcA MCAODC_02360 0.23 -0.5 484,658 - bdcA MCAODC_02360 0.23 -3.8 484,661 + bdcA MCAODC_02360 0.24 +0.6 484,661 + bdcA MCAODC_02360 0.24 +0.2 484,667 + bdcA MCAODC_02360 0.25 -1.0 484,667 + bdcA MCAODC_02360 0.25 +1.3 484,667 + bdcA MCAODC_02360 0.25 -0.7 484,668 - bdcA MCAODC_02360 0.25 -2.4 484,668 - bdcA MCAODC_02360 0.25 +0.1
Or see this region's nucleotide sequence