Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt opgB and lgoD are separated by 136 nucleotides lgoD and lgoR are separated by 138 nucleotides
MCAODC_01870: opgB - phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase, at 357,842 to 360,133
opgB
MCAODC_01875: lgoD - L-galactonate oxidoreductase, at 360,270 to 361,292
lgoD
MCAODC_01880: lgoR - putative HTH-type transcriptional regulator LgoR, at 361,431 to 362,345
lgoR
Position (kb) 360
361
362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 359.504 kb on + strand, within opgB at 359.504 kb on + strand, within opgB at 359.504 kb on + strand, within opgB at 359.504 kb on + strand, within opgB at 359.505 kb on - strand, within opgB at 359.635 kb on + strand, within opgB at 359.636 kb on - strand, within opgB at 359.641 kb on + strand, within opgB at 359.642 kb on - strand, within opgB at 359.642 kb on - strand, within opgB at 359.704 kb on + strand, within opgB at 359.734 kb on + strand, within opgB at 359.735 kb on - strand, within opgB at 359.832 kb on + strand, within opgB at 359.902 kb on + strand, within opgB at 360.022 kb on - strand at 360.061 kb on + strand at 360.110 kb on - strand at 360.118 kb on - strand at 360.118 kb on - strand at 360.131 kb on + strand at 360.149 kb on + strand at 360.149 kb on + strand at 360.150 kb on - strand at 360.150 kb on - strand at 360.170 kb on + strand at 360.170 kb on + strand at 360.170 kb on + strand at 360.170 kb on + strand at 360.188 kb on + strand at 360.188 kb on + strand at 360.198 kb on + strand at 360.201 kb on + strand at 360.201 kb on + strand at 360.202 kb on - strand at 360.202 kb on - strand at 360.255 kb on + strand at 360.255 kb on + strand at 360.256 kb on - strand at 360.258 kb on + strand at 360.259 kb on - strand at 360.278 kb on + strand at 360.278 kb on + strand at 360.278 kb on + strand at 360.279 kb on - strand at 360.282 kb on + strand at 360.283 kb on - strand at 360.294 kb on + strand at 360.326 kb on - strand at 360.468 kb on - strand, within lgoD at 360.519 kb on + strand, within lgoD at 360.520 kb on - strand, within lgoD at 360.520 kb on - strand, within lgoD at 360.520 kb on - strand, within lgoD at 360.558 kb on - strand, within lgoD at 360.575 kb on + strand, within lgoD at 360.576 kb on - strand, within lgoD at 360.925 kb on + strand, within lgoD at 360.932 kb on + strand, within lgoD at 360.933 kb on - strand, within lgoD at 361.027 kb on + strand, within lgoD at 361.027 kb on + strand, within lgoD at 361.102 kb on - strand, within lgoD at 361.102 kb on - strand, within lgoD at 361.126 kb on + strand, within lgoD at 361.228 kb on - strand at 361.384 kb on + strand at 361.430 kb on + strand at 361.485 kb on - strand at 361.485 kb on - strand at 361.500 kb on - strand at 361.542 kb on + strand, within lgoR at 361.542 kb on + strand, within lgoR at 361.542 kb on + strand, within lgoR at 361.543 kb on - strand, within lgoR at 361.543 kb on - strand, within lgoR at 361.543 kb on - strand, within lgoR at 361.559 kb on + strand, within lgoR at 361.560 kb on - strand, within lgoR at 361.572 kb on - strand, within lgoR at 361.572 kb on - strand, within lgoR at 361.603 kb on + strand, within lgoR at 361.623 kb on + strand, within lgoR at 361.623 kb on + strand, within lgoR at 361.628 kb on + strand, within lgoR at 361.628 kb on + strand, within lgoR at 361.629 kb on - strand, within lgoR at 361.629 kb on - strand, within lgoR at 361.629 kb on - strand, within lgoR at 361.670 kb on + strand, within lgoR at 361.671 kb on - strand, within lgoR at 361.727 kb on - strand, within lgoR at 361.815 kb on + strand, within lgoR at 361.838 kb on + strand, within lgoR at 361.838 kb on + strand, within lgoR at 361.839 kb on - strand, within lgoR at 362.183 kb on + strand, within lgoR at 362.184 kb on - strand, within lgoR at 362.196 kb on - strand, within lgoR at 362.216 kb on + strand, within lgoR at 362.216 kb on + strand, within lgoR at 362.216 kb on + strand, within lgoR at 362.217 kb on - strand, within lgoR at 362.217 kb on - strand, within lgoR
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 359,504 + opgB MCAODC_01870 0.73 -1.0 359,504 + opgB MCAODC_01870 0.73 -0.1 359,504 + opgB MCAODC_01870 0.73 +0.3 359,504 + opgB MCAODC_01870 0.73 -0.5 359,505 - opgB MCAODC_01870 0.73 -3.4 359,635 + opgB MCAODC_01870 0.78 -0.7 359,636 - opgB MCAODC_01870 0.78 +0.8 359,641 + opgB MCAODC_01870 0.78 +0.9 359,642 - opgB MCAODC_01870 0.79 +1.0 359,642 - opgB MCAODC_01870 0.79 +1.0 359,704 + opgB MCAODC_01870 0.81 +0.1 359,734 + opgB MCAODC_01870 0.83 +1.3 359,735 - opgB MCAODC_01870 0.83 +0.5 359,832 + opgB MCAODC_01870 0.87 -1.2 359,902 + opgB MCAODC_01870 0.90 -2.7 360,022 - +2.0 360,061 + -0.3 360,110 - +2.5 360,118 - +0.9 360,118 - +0.8 360,131 + -1.1 360,149 + -2.9 360,149 + -2.6 360,150 - +0.6 360,150 - +0.5 360,170 + +1.0 360,170 + +0.8 360,170 + +0.3 360,170 + +1.1 360,188 + +0.6 360,188 + +1.4 360,198 + -0.3 360,201 + -2.9 360,201 + +2.3 360,202 - +0.2 360,202 - +0.6 360,255 + +2.3 360,255 + -0.2 360,256 - -0.2 360,258 + -0.2 360,259 - -0.2 360,278 + +0.4 360,278 + -0.5 360,278 + -4.4 360,279 - -0.1 360,282 + +0.4 360,283 - +0.8 360,294 + -1.0 360,326 - -0.5 360,468 - lgoD MCAODC_01875 0.19 +0.7 360,519 + lgoD MCAODC_01875 0.24 +0.3 360,520 - lgoD MCAODC_01875 0.24 -0.9 360,520 - lgoD MCAODC_01875 0.24 -0.6 360,520 - lgoD MCAODC_01875 0.24 +1.6 360,558 - lgoD MCAODC_01875 0.28 +0.2 360,575 + lgoD MCAODC_01875 0.30 +0.6 360,576 - lgoD MCAODC_01875 0.30 +0.8 360,925 + lgoD MCAODC_01875 0.64 +1.0 360,932 + lgoD MCAODC_01875 0.65 -1.6 360,933 - lgoD MCAODC_01875 0.65 -0.1 361,027 + lgoD MCAODC_01875 0.74 -0.4 361,027 + lgoD MCAODC_01875 0.74 -0.2 361,102 - lgoD MCAODC_01875 0.81 -0.8 361,102 - lgoD MCAODC_01875 0.81 +0.3 361,126 + lgoD MCAODC_01875 0.84 -1.2 361,228 - +1.0 361,384 + -0.6 361,430 + -0.7 361,485 - -0.0 361,485 - +0.5 361,500 - -0.1 361,542 + lgoR MCAODC_01880 0.12 +0.6 361,542 + lgoR MCAODC_01880 0.12 +1.0 361,542 + lgoR MCAODC_01880 0.12 +0.7 361,543 - lgoR MCAODC_01880 0.12 +0.4 361,543 - lgoR MCAODC_01880 0.12 -0.1 361,543 - lgoR MCAODC_01880 0.12 +0.9 361,559 + lgoR MCAODC_01880 0.14 -1.5 361,560 - lgoR MCAODC_01880 0.14 +0.7 361,572 - lgoR MCAODC_01880 0.15 -1.1 361,572 - lgoR MCAODC_01880 0.15 -0.7 361,603 + lgoR MCAODC_01880 0.19 -0.3 361,623 + lgoR MCAODC_01880 0.21 -0.4 361,623 + lgoR MCAODC_01880 0.21 -1.0 361,628 + lgoR MCAODC_01880 0.22 -0.6 361,628 + lgoR MCAODC_01880 0.22 +0.5 361,629 - lgoR MCAODC_01880 0.22 -2.6 361,629 - lgoR MCAODC_01880 0.22 -1.2 361,629 - lgoR MCAODC_01880 0.22 -2.9 361,670 + lgoR MCAODC_01880 0.26 +0.4 361,671 - lgoR MCAODC_01880 0.26 +1.1 361,727 - lgoR MCAODC_01880 0.32 +0.7 361,815 + lgoR MCAODC_01880 0.42 +0.6 361,838 + lgoR MCAODC_01880 0.44 -3.1 361,838 + lgoR MCAODC_01880 0.44 -2.5 361,839 - lgoR MCAODC_01880 0.45 +0.2 362,183 + lgoR MCAODC_01880 0.82 +0.1 362,184 - lgoR MCAODC_01880 0.82 -0.1 362,196 - lgoR MCAODC_01880 0.84 -0.5 362,216 + lgoR MCAODC_01880 0.86 +1.2 362,216 + lgoR MCAODC_01880 0.86 -0.1 362,216 + lgoR MCAODC_01880 0.86 -0.0 362,217 - lgoR MCAODC_01880 0.86 -2.1 362,217 - lgoR MCAODC_01880 0.86 -2.7
Or see this region's nucleotide sequence