Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadR and radA are separated by 20 nucleotides radA and serB are separated by 48 nucleotides
MCAODC_01705: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 330,295 to 331,527
nadR
MCAODC_01710: radA - DNA repair protein RadA, at 331,548 to 332,930
radA
MCAODC_01715: serB - phosphoserine phosphatase, at 332,979 to 333,947
serB
Position (kb) 331
332
333 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 330.563 kb on + strand, within nadR at 330.728 kb on + strand, within nadR at 330.768 kb on + strand, within nadR at 330.831 kb on + strand, within nadR at 330.864 kb on + strand, within nadR at 330.864 kb on + strand, within nadR at 330.864 kb on + strand, within nadR at 330.865 kb on - strand, within nadR at 330.865 kb on - strand, within nadR at 330.866 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.919 kb on - strand, within nadR at 330.919 kb on - strand, within nadR at 330.924 kb on + strand, within nadR at 330.924 kb on + strand, within nadR at 330.969 kb on + strand, within nadR at 330.969 kb on + strand, within nadR at 330.970 kb on - strand, within nadR at 330.970 kb on - strand, within nadR at 330.970 kb on - strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 331.048 kb on - strand, within nadR at 331.131 kb on - strand, within nadR at 331.131 kb on - strand, within nadR at 331.134 kb on + strand, within nadR at 331.242 kb on + strand, within nadR at 331.243 kb on - strand, within nadR at 331.243 kb on - strand, within nadR at 331.243 kb on - strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.296 kb on + strand, within nadR at 331.308 kb on - strand, within nadR at 331.423 kb on + strand at 331.423 kb on + strand at 331.432 kb on + strand at 331.432 kb on + strand at 331.432 kb on + strand at 331.432 kb on + strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.436 kb on + strand at 331.465 kb on + strand at 331.465 kb on + strand at 331.466 kb on - strand at 331.527 kb on + strand at 331.527 kb on + strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.540 kb on - strand at 331.549 kb on + strand at 331.549 kb on + strand at 331.549 kb on + strand at 331.550 kb on - strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.552 kb on - strand at 331.552 kb on - strand at 332.202 kb on + strand, within radA at 332.203 kb on - strand, within radA at 332.203 kb on - strand, within radA at 332.269 kb on - strand, within radA at 332.323 kb on + strand, within radA at 332.323 kb on + strand, within radA at 332.324 kb on - strand, within radA at 332.355 kb on - strand, within radA at 332.355 kb on - strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.381 kb on + strand, within radA at 332.382 kb on - strand, within radA at 332.382 kb on - strand, within radA at 332.407 kb on - strand, within radA at 332.407 kb on - strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.551 kb on + strand, within radA at 332.551 kb on + strand, within radA at 332.552 kb on - strand, within radA at 332.552 kb on - strand, within radA at 332.552 kb on - strand, within radA at 332.596 kb on - strand, within radA at 332.596 kb on - strand, within radA at 332.668 kb on - strand, within radA at 332.668 kb on - strand, within radA at 332.671 kb on - strand, within radA at 332.770 kb on + strand, within radA at 332.790 kb on - strand, within radA at 332.802 kb on - strand at 332.897 kb on + strand at 332.898 kb on - strand at 332.936 kb on - strand at 332.936 kb on - strand at 332.980 kb on + strand at 332.980 kb on + strand at 332.980 kb on + strand at 333.083 kb on - strand, within serB at 333.083 kb on - strand, within serB at 333.205 kb on + strand, within serB at 333.206 kb on - strand, within serB at 333.216 kb on + strand, within serB at 333.217 kb on - strand, within serB at 333.276 kb on + strand, within serB at 333.311 kb on - strand, within serB at 333.391 kb on - strand, within serB at 333.434 kb on + strand, within serB at 333.434 kb on + strand, within serB at 333.435 kb on - strand, within serB at 333.569 kb on + strand, within serB at 333.570 kb on - strand, within serB at 333.570 kb on - strand, within serB at 333.570 kb on - strand, within serB at 333.803 kb on + strand, within serB at 333.803 kb on + strand, within serB at 333.820 kb on + strand, within serB at 333.820 kb on + strand, within serB at 333.821 kb on - strand, within serB at 333.821 kb on - strand, within serB at 333.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 330,563 + nadR MCAODC_01705 0.22 -1.3 330,728 + nadR MCAODC_01705 0.35 -0.2 330,768 + nadR MCAODC_01705 0.38 +2.9 330,831 + nadR MCAODC_01705 0.43 +0.6 330,864 + nadR MCAODC_01705 0.46 +0.7 330,864 + nadR MCAODC_01705 0.46 +0.7 330,864 + nadR MCAODC_01705 0.46 +0.7 330,865 - nadR MCAODC_01705 0.46 +0.1 330,865 - nadR MCAODC_01705 0.46 +1.8 330,866 + nadR MCAODC_01705 0.46 +0.8 330,918 + nadR MCAODC_01705 0.51 +0.8 330,918 + nadR MCAODC_01705 0.51 +0.2 330,918 + nadR MCAODC_01705 0.51 +1.1 330,918 + nadR MCAODC_01705 0.51 +1.0 330,919 - nadR MCAODC_01705 0.51 +0.2 330,919 - nadR MCAODC_01705 0.51 -0.3 330,924 + nadR MCAODC_01705 0.51 +0.9 330,924 + nadR MCAODC_01705 0.51 +0.9 330,969 + nadR MCAODC_01705 0.55 +0.7 330,969 + nadR MCAODC_01705 0.55 +0.4 330,970 - nadR MCAODC_01705 0.55 +1.1 330,970 - nadR MCAODC_01705 0.55 +0.7 330,970 - nadR MCAODC_01705 0.55 +0.5 330,971 + nadR MCAODC_01705 0.55 -2.0 330,971 + nadR MCAODC_01705 0.55 -0.2 330,971 + nadR MCAODC_01705 0.55 -1.9 330,971 + nadR MCAODC_01705 0.55 +0.6 330,971 + nadR MCAODC_01705 0.55 +0.6 330,972 - nadR MCAODC_01705 0.55 +1.8 330,972 - nadR MCAODC_01705 0.55 +1.2 330,972 - nadR MCAODC_01705 0.55 +0.4 330,972 - nadR MCAODC_01705 0.55 -2.4 330,972 - nadR MCAODC_01705 0.55 -0.1 330,972 - nadR MCAODC_01705 0.55 -1.1 331,048 - nadR MCAODC_01705 0.61 +0.1 331,131 - nadR MCAODC_01705 0.68 +0.4 331,131 - nadR MCAODC_01705 0.68 -0.6 331,134 + nadR MCAODC_01705 0.68 +1.0 331,242 + nadR MCAODC_01705 0.77 -0.1 331,243 - nadR MCAODC_01705 0.77 -0.2 331,243 - nadR MCAODC_01705 0.77 +1.2 331,243 - nadR MCAODC_01705 0.77 +0.9 331,283 + nadR MCAODC_01705 0.80 -0.0 331,283 + nadR MCAODC_01705 0.80 +0.6 331,283 + nadR MCAODC_01705 0.80 +1.1 331,283 + nadR MCAODC_01705 0.80 +1.8 331,283 + nadR MCAODC_01705 0.80 -0.1 331,284 - nadR MCAODC_01705 0.80 -2.4 331,284 - nadR MCAODC_01705 0.80 +0.4 331,284 - nadR MCAODC_01705 0.80 +1.7 331,284 - nadR MCAODC_01705 0.80 +0.5 331,284 - nadR MCAODC_01705 0.80 +1.9 331,284 - nadR MCAODC_01705 0.80 +0.4 331,284 - nadR MCAODC_01705 0.80 +0.3 331,284 - nadR MCAODC_01705 0.80 -2.0 331,284 - nadR MCAODC_01705 0.80 -1.3 331,287 + nadR MCAODC_01705 0.80 +0.2 331,287 + nadR MCAODC_01705 0.80 +0.6 331,287 + nadR MCAODC_01705 0.80 +1.7 331,287 + nadR MCAODC_01705 0.80 -0.7 331,287 + nadR MCAODC_01705 0.80 -0.8 331,288 - nadR MCAODC_01705 0.81 +1.0 331,288 - nadR MCAODC_01705 0.81 -0.3 331,288 - nadR MCAODC_01705 0.81 +1.4 331,288 - nadR MCAODC_01705 0.81 -3.7 331,288 - nadR MCAODC_01705 0.81 -0.9 331,296 + nadR MCAODC_01705 0.81 +0.2 331,308 - nadR MCAODC_01705 0.82 +0.3 331,423 + +1.0 331,423 + -0.5 331,432 + +2.7 331,432 + -0.3 331,432 + +0.2 331,432 + -0.5 331,433 - +0.3 331,433 - -0.4 331,433 - -0.1 331,433 - -0.2 331,433 - +0.8 331,436 + +0.1 331,465 + -1.2 331,465 + -1.1 331,466 - +0.3 331,527 + +0.2 331,527 + -0.2 331,528 - +1.0 331,528 - +0.7 331,528 - +0.6 331,528 - +0.9 331,528 - -1.3 331,540 - +0.3 331,549 + +0.9 331,549 + +1.1 331,549 + +0.8 331,550 - +0.2 331,551 + -0.5 331,551 + -1.8 331,551 + +0.5 331,551 + -2.7 331,551 + -1.4 331,552 - -1.0 331,552 - +0.2 332,202 + radA MCAODC_01710 0.47 +0.4 332,203 - radA MCAODC_01710 0.47 -2.9 332,203 - radA MCAODC_01710 0.47 +0.2 332,269 - radA MCAODC_01710 0.52 -0.9 332,323 + radA MCAODC_01710 0.56 -2.7 332,323 + radA MCAODC_01710 0.56 +0.7 332,324 - radA MCAODC_01710 0.56 -0.5 332,355 - radA MCAODC_01710 0.58 -0.2 332,355 - radA MCAODC_01710 0.58 +1.9 332,370 + radA MCAODC_01710 0.59 -0.0 332,370 + radA MCAODC_01710 0.59 +0.4 332,370 + radA MCAODC_01710 0.59 -1.0 332,370 + radA MCAODC_01710 0.59 -2.5 332,371 - radA MCAODC_01710 0.60 -1.0 332,371 - radA MCAODC_01710 0.60 -2.5 332,371 - radA MCAODC_01710 0.60 +0.9 332,371 - radA MCAODC_01710 0.60 -1.3 332,381 + radA MCAODC_01710 0.60 +0.8 332,382 - radA MCAODC_01710 0.60 -3.1 332,382 - radA MCAODC_01710 0.60 +0.7 332,407 - radA MCAODC_01710 0.62 +1.3 332,407 - radA MCAODC_01710 0.62 +0.1 332,474 + radA MCAODC_01710 0.67 +0.1 332,474 + radA MCAODC_01710 0.67 -3.5 332,474 + radA MCAODC_01710 0.67 +0.7 332,474 + radA MCAODC_01710 0.67 -3.1 332,475 - radA MCAODC_01710 0.67 +1.3 332,475 - radA MCAODC_01710 0.67 +0.2 332,475 - radA MCAODC_01710 0.67 -1.2 332,475 - radA MCAODC_01710 0.67 -0.5 332,551 + radA MCAODC_01710 0.73 -0.3 332,551 + radA MCAODC_01710 0.73 +0.7 332,552 - radA MCAODC_01710 0.73 -4.1 332,552 - radA MCAODC_01710 0.73 -1.1 332,552 - radA MCAODC_01710 0.73 -0.3 332,596 - radA MCAODC_01710 0.76 -3.1 332,596 - radA MCAODC_01710 0.76 +2.0 332,668 - radA MCAODC_01710 0.81 +1.0 332,668 - radA MCAODC_01710 0.81 +0.3 332,671 - radA MCAODC_01710 0.81 -1.9 332,770 + radA MCAODC_01710 0.88 -0.5 332,790 - radA MCAODC_01710 0.90 +0.5 332,802 - +1.0 332,897 + -0.6 332,898 - -2.4 332,936 - +1.2 332,936 - +0.1 332,980 + +0.5 332,980 + +0.4 332,980 + -3.0 333,083 - serB MCAODC_01715 0.11 -3.3 333,083 - serB MCAODC_01715 0.11 +0.7 333,205 + serB MCAODC_01715 0.23 -3.1 333,206 - serB MCAODC_01715 0.23 -4.0 333,216 + serB MCAODC_01715 0.24 -4.7 333,217 - serB MCAODC_01715 0.25 -2.2 333,276 + serB MCAODC_01715 0.31 +0.7 333,311 - serB MCAODC_01715 0.34 -3.2 333,391 - serB MCAODC_01715 0.43 -2.7 333,434 + serB MCAODC_01715 0.47 -4.8 333,434 + serB MCAODC_01715 0.47 -3.9 333,435 - serB MCAODC_01715 0.47 -5.0 333,569 + serB MCAODC_01715 0.61 -4.5 333,570 - serB MCAODC_01715 0.61 -2.7 333,570 - serB MCAODC_01715 0.61 -4.1 333,570 - serB MCAODC_01715 0.61 -3.3 333,803 + serB MCAODC_01715 0.85 -4.7 333,803 + serB MCAODC_01715 0.85 +1.3 333,820 + serB MCAODC_01715 0.87 -3.4 333,820 + serB MCAODC_01715 0.87 -1.7 333,821 - serB MCAODC_01715 0.87 -4.5 333,821 - serB MCAODC_01715 0.87 -4.5 333,879 + -0.0
Or see this region's nucleotide sequence