Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaJ and dnaK are separated by 88 nucleotides dnaK and yaaI are separated by 376 nucleotides yaaI and msyB are separated by 25 nucleotides
MCAODC_01560: dnaJ - molecular chaperone DnaJ, at 301,875 to 303,005
dnaJ
MCAODC_01570: dnaK - molecular chaperone DnaK, at 303,094 to 305,010
dnaK
MCAODC_01575: yaaI - DUF2541 domain-containing protein, at 305,387 to 305,791
yaaI
MCAODC_01580: msyB - acidic protein MsyB, at 305,817 to 306,530
msyB
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 302.801 kb on - strand, within dnaJ at 302.810 kb on - strand, within dnaJ at 302.846 kb on - strand, within dnaJ at 302.933 kb on - strand at 302.977 kb on - strand at 302.990 kb on - strand at 303.073 kb on - strand at 303.073 kb on - strand at 303.073 kb on - strand at 303.073 kb on - strand at 303.076 kb on - strand at 303.448 kb on - strand, within dnaK at 305.059 kb on - strand at 305.059 kb on - strand at 305.129 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.133 kb on - strand at 305.133 kb on - strand at 305.249 kb on - strand at 305.249 kb on - strand at 305.249 kb on - strand at 305.250 kb on + strand at 305.250 kb on + strand at 305.251 kb on - strand at 305.337 kb on + strand at 305.374 kb on + strand at 305.464 kb on + strand, within yaaI at 305.464 kb on + strand, within yaaI at 305.464 kb on + strand, within yaaI at 305.465 kb on - strand, within yaaI at 305.465 kb on - strand, within yaaI at 305.550 kb on + strand, within yaaI at 305.550 kb on + strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.577 kb on + strand, within yaaI at 305.584 kb on - strand, within yaaI at 305.584 kb on - strand, within yaaI at 305.638 kb on + strand, within yaaI at 305.652 kb on + strand, within yaaI at 305.740 kb on + strand, within yaaI at 305.800 kb on + strand at 305.801 kb on - strand at 305.802 kb on + strand at 305.802 kb on + strand at 305.802 kb on + strand at 305.803 kb on - strand at 305.803 kb on - strand at 305.830 kb on - strand at 305.867 kb on + strand at 305.867 kb on + strand at 305.867 kb on + strand at 305.867 kb on + strand at 305.868 kb on - strand at 305.868 kb on - strand at 305.868 kb on - strand at 305.868 kb on - strand at 305.881 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 302,801 - dnaJ MCAODC_01560 0.82 -0.5 302,810 - dnaJ MCAODC_01560 0.83 +0.1 302,846 - dnaJ MCAODC_01560 0.86 -0.3 302,933 - -2.7 302,977 - -0.5 302,990 - -0.4 303,073 - +0.5 303,073 - +0.1 303,073 - -0.2 303,073 - +0.6 303,076 - +0.1 303,448 - dnaK MCAODC_01570 0.18 -0.1 305,059 - -1.6 305,059 - +1.7 305,129 + -0.0 305,132 + -0.2 305,132 + +0.9 305,132 + +0.5 305,132 + -2.7 305,132 + +2.1 305,132 + -2.0 305,133 - -1.0 305,133 - -0.0 305,249 - -0.2 305,249 - +0.2 305,249 - -1.1 305,250 + +0.1 305,250 + +0.8 305,251 - -2.4 305,337 + +0.2 305,374 + -0.3 305,464 + yaaI MCAODC_01575 0.19 +0.6 305,464 + yaaI MCAODC_01575 0.19 +0.5 305,464 + yaaI MCAODC_01575 0.19 -0.1 305,465 - yaaI MCAODC_01575 0.19 -3.1 305,465 - yaaI MCAODC_01575 0.19 +0.8 305,550 + yaaI MCAODC_01575 0.40 -0.1 305,550 + yaaI MCAODC_01575 0.40 -0.6 305,551 - yaaI MCAODC_01575 0.40 +0.6 305,551 - yaaI MCAODC_01575 0.40 -0.5 305,551 - yaaI MCAODC_01575 0.40 +0.6 305,551 - yaaI MCAODC_01575 0.40 +0.5 305,577 + yaaI MCAODC_01575 0.47 +0.5 305,584 - yaaI MCAODC_01575 0.49 -1.0 305,584 - yaaI MCAODC_01575 0.49 +2.3 305,638 + yaaI MCAODC_01575 0.62 -1.5 305,652 + yaaI MCAODC_01575 0.65 -1.0 305,740 + yaaI MCAODC_01575 0.87 -0.0 305,800 + -0.7 305,801 - +0.4 305,802 + +1.1 305,802 + -0.9 305,802 + -0.2 305,803 - +0.8 305,803 - +1.3 305,830 - +1.7 305,867 + -0.2 305,867 + +0.1 305,867 + +1.3 305,867 + -0.3 305,868 - +3.1 305,868 - -1.0 305,868 - -0.5 305,868 - +0.9 305,881 + +0.5
Or see this region's nucleotide sequence