Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15955

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15950 and A4249_RS15955 are separated by 64 nucleotidesA4249_RS15955 and A4249_RS15960 are separated by 3 nucleotidesA4249_RS15960 and A4249_RS15965 overlap by 1 nucleotidesA4249_RS15965 and A4249_RS15970 are separated by 20 nucleotides A4249_RS15950: A4249_RS15950 - acyltransferase family protein, at 3,219,076 to 3,220,293 _RS15950 A4249_RS15955: A4249_RS15955 - hypothetical protein, at 3,220,358 to 3,221,011 _RS15955 A4249_RS15960: A4249_RS15960 - transcriptional regulator, at 3,221,015 to 3,221,317 _RS15960 A4249_RS15965: A4249_RS15965 - YdeI/OmpD-associated family protein, at 3,221,317 to 3,221,913 _RS15965 A4249_RS15970: A4249_RS15970 - dihydropteroate synthase, at 3,221,934 to 3,222,734 _RS15970 Position (kb) 3220 3221 3222Strain fitness (log2 ratio) -2 -1 0 1 2at 3219.481 kb on + strand, within A4249_RS15950at 3219.481 kb on + strand, within A4249_RS15950at 3219.481 kb on + strand, within A4249_RS15950at 3219.482 kb on - strand, within A4249_RS15950at 3219.482 kb on - strand, within A4249_RS15950at 3219.482 kb on - strand, within A4249_RS15950at 3219.482 kb on - strand, within A4249_RS15950at 3219.541 kb on + strand, within A4249_RS15950at 3219.541 kb on + strand, within A4249_RS15950at 3219.541 kb on + strand, within A4249_RS15950at 3219.541 kb on + strand, within A4249_RS15950at 3219.542 kb on - strand, within A4249_RS15950at 3219.542 kb on - strand, within A4249_RS15950at 3219.542 kb on - strand, within A4249_RS15950at 3219.621 kb on + strand, within A4249_RS15950at 3219.632 kb on + strand, within A4249_RS15950at 3219.633 kb on - strand, within A4249_RS15950at 3219.886 kb on + strand, within A4249_RS15950at 3219.886 kb on + strand, within A4249_RS15950at 3219.886 kb on + strand, within A4249_RS15950at 3219.887 kb on - strand, within A4249_RS15950at 3219.887 kb on - strand, within A4249_RS15950at 3219.976 kb on + strand, within A4249_RS15950at 3220.004 kb on + strand, within A4249_RS15950at 3220.004 kb on + strand, within A4249_RS15950at 3220.005 kb on - strand, within A4249_RS15950at 3220.046 kb on - strand, within A4249_RS15950at 3220.063 kb on + strand, within A4249_RS15950at 3220.064 kb on - strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.072 kb on + strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.073 kb on - strand, within A4249_RS15950at 3220.074 kb on + strand, within A4249_RS15950at 3220.075 kb on - strand, within A4249_RS15950at 3220.143 kb on - strand, within A4249_RS15950at 3220.143 kb on - strand, within A4249_RS15950at 3220.184 kb on + strandat 3220.185 kb on - strandat 3220.192 kb on + strandat 3220.192 kb on + strandat 3220.193 kb on - strandat 3220.220 kb on + strandat 3220.221 kb on - strandat 3220.221 kb on - strandat 3220.430 kb on - strand, within A4249_RS15955at 3220.430 kb on - strand, within A4249_RS15955at 3220.463 kb on + strand, within A4249_RS15955at 3220.463 kb on + strand, within A4249_RS15955at 3220.464 kb on - strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.484 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.757 kb on + strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.758 kb on - strand, within A4249_RS15955at 3220.761 kb on - strand, within A4249_RS15955at 3220.808 kb on + strand, within A4249_RS15955at 3220.808 kb on + strand, within A4249_RS15955at 3220.808 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.904 kb on + strand, within A4249_RS15955at 3220.910 kb on + strand, within A4249_RS15955at 3220.910 kb on + strand, within A4249_RS15955at 3220.910 kb on + strand, within A4249_RS15955at 3220.911 kb on - strand, within A4249_RS15955at 3220.911 kb on - strand, within A4249_RS15955at 3221.085 kb on - strand, within A4249_RS15960at 3221.085 kb on - strand, within A4249_RS15960at 3221.085 kb on - strand, within A4249_RS15960at 3221.085 kb on - strand, within A4249_RS15960at 3221.166 kb on - strand, within A4249_RS15960at 3221.189 kb on + strand, within A4249_RS15960at 3221.190 kb on - strand, within A4249_RS15960at 3221.190 kb on - strand, within A4249_RS15960at 3221.190 kb on - strand, within A4249_RS15960at 3221.277 kb on - strand, within A4249_RS15960at 3221.429 kb on + strand, within A4249_RS15965at 3221.429 kb on + strand, within A4249_RS15965at 3221.429 kb on + strand, within A4249_RS15965at 3221.430 kb on - strand, within A4249_RS15965at 3221.430 kb on - strand, within A4249_RS15965at 3221.693 kb on - strand, within A4249_RS15965at 3221.806 kb on + strand, within A4249_RS15965

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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3,219,481 + A4249_RS15950 0.33 +0.2
3,219,481 + A4249_RS15950 0.33 +0.8
3,219,481 + A4249_RS15950 0.33 -0.1
3,219,482 - A4249_RS15950 0.33 -0.4
3,219,482 - A4249_RS15950 0.33 -1.7
3,219,482 - A4249_RS15950 0.33 +1.0
3,219,482 - A4249_RS15950 0.33 -0.5
3,219,541 + A4249_RS15950 0.38 +0.0
3,219,541 + A4249_RS15950 0.38 +0.7
3,219,541 + A4249_RS15950 0.38 +0.7
3,219,541 + A4249_RS15950 0.38 +0.5
3,219,542 - A4249_RS15950 0.38 +0.4
3,219,542 - A4249_RS15950 0.38 -0.8
3,219,542 - A4249_RS15950 0.38 +0.7
3,219,621 + A4249_RS15950 0.45 +0.0
3,219,632 + A4249_RS15950 0.46 -0.0
3,219,633 - A4249_RS15950 0.46 +0.3
3,219,886 + A4249_RS15950 0.67 +0.4
3,219,886 + A4249_RS15950 0.67 -0.3
3,219,886 + A4249_RS15950 0.67 -0.2
3,219,887 - A4249_RS15950 0.67 +0.3
3,219,887 - A4249_RS15950 0.67 +1.2
3,219,976 + A4249_RS15950 0.74 +0.1
3,220,004 + A4249_RS15950 0.76 +0.2
3,220,004 + A4249_RS15950 0.76 -0.1
3,220,005 - A4249_RS15950 0.76 -0.2
3,220,046 - A4249_RS15950 0.80 +0.4
3,220,063 + A4249_RS15950 0.81 +1.3
3,220,064 - A4249_RS15950 0.81 +0.7
3,220,072 + A4249_RS15950 0.82 +0.1
3,220,072 + A4249_RS15950 0.82 +0.4
3,220,072 + A4249_RS15950 0.82 +0.1
3,220,072 + A4249_RS15950 0.82 -0.0
3,220,072 + A4249_RS15950 0.82 -0.6
3,220,072 + A4249_RS15950 0.82 +0.5
3,220,072 + A4249_RS15950 0.82 +0.1
3,220,072 + A4249_RS15950 0.82 +0.2
3,220,072 + A4249_RS15950 0.82 -0.2
3,220,072 + A4249_RS15950 0.82 -0.2
3,220,072 + A4249_RS15950 0.82 +0.2
3,220,072 + A4249_RS15950 0.82 -0.2
3,220,072 + A4249_RS15950 0.82 -1.6
3,220,072 + A4249_RS15950 0.82 -1.2
3,220,072 + A4249_RS15950 0.82 -0.0
3,220,073 - A4249_RS15950 0.82 +1.1
3,220,073 - A4249_RS15950 0.82 -0.1
3,220,073 - A4249_RS15950 0.82 -0.9
3,220,073 - A4249_RS15950 0.82 -0.2
3,220,073 - A4249_RS15950 0.82 +0.1
3,220,073 - A4249_RS15950 0.82 -0.0
3,220,073 - A4249_RS15950 0.82 -0.2
3,220,073 - A4249_RS15950 0.82 +0.1
3,220,073 - A4249_RS15950 0.82 +0.3
3,220,073 - A4249_RS15950 0.82 -0.1
3,220,073 - A4249_RS15950 0.82 -0.3
3,220,073 - A4249_RS15950 0.82 +0.9
3,220,073 - A4249_RS15950 0.82 +0.8
3,220,073 - A4249_RS15950 0.82 -0.2
3,220,073 - A4249_RS15950 0.82 -2.0
3,220,073 - A4249_RS15950 0.82 -0.4
3,220,073 - A4249_RS15950 0.82 +0.4
3,220,074 + A4249_RS15950 0.82 +0.1
3,220,075 - A4249_RS15950 0.82 +0.1
3,220,143 - A4249_RS15950 0.88 +0.4
3,220,143 - A4249_RS15950 0.88 -0.0
3,220,184 + +0.7
3,220,185 - +0.6
3,220,192 + +0.5
3,220,192 + +1.5
3,220,193 - +0.7
3,220,220 + -0.1
3,220,221 - +0.5
3,220,221 - +0.7
3,220,430 - A4249_RS15955 0.11 -2.0
3,220,430 - A4249_RS15955 0.11 +0.7
3,220,463 + A4249_RS15955 0.16 +0.4
3,220,463 + A4249_RS15955 0.16 +0.2
3,220,464 - A4249_RS15955 0.16 +0.1
3,220,484 + A4249_RS15955 0.19 +0.1
3,220,484 + A4249_RS15955 0.19 +0.5
3,220,484 + A4249_RS15955 0.19 -0.4
3,220,484 + A4249_RS15955 0.19 -0.7
3,220,484 + A4249_RS15955 0.19 -1.2
3,220,484 + A4249_RS15955 0.19 -0.2
3,220,484 + A4249_RS15955 0.19 -0.1
3,220,757 + A4249_RS15955 0.61 +1.1
3,220,757 + A4249_RS15955 0.61 +0.7
3,220,757 + A4249_RS15955 0.61 -0.2
3,220,757 + A4249_RS15955 0.61 -0.4
3,220,757 + A4249_RS15955 0.61 -0.4
3,220,758 - A4249_RS15955 0.61 +0.7
3,220,758 - A4249_RS15955 0.61 -0.0
3,220,758 - A4249_RS15955 0.61 -0.0
3,220,758 - A4249_RS15955 0.61 +0.8
3,220,761 - A4249_RS15955 0.62 +0.1
3,220,808 + A4249_RS15955 0.69 -0.1
3,220,808 + A4249_RS15955 0.69 +0.2
3,220,808 + A4249_RS15955 0.69 +0.1
3,220,904 + A4249_RS15955 0.83 +0.8
3,220,904 + A4249_RS15955 0.83 -1.3
3,220,904 + A4249_RS15955 0.83 +0.9
3,220,904 + A4249_RS15955 0.83 +0.3
3,220,910 + A4249_RS15955 0.84 +0.3
3,220,910 + A4249_RS15955 0.84 -0.0
3,220,910 + A4249_RS15955 0.84 -0.9
3,220,911 - A4249_RS15955 0.85 +0.3
3,220,911 - A4249_RS15955 0.85 +0.7
3,221,085 - A4249_RS15960 0.23 +0.3
3,221,085 - A4249_RS15960 0.23 -0.3
3,221,085 - A4249_RS15960 0.23 +0.2
3,221,085 - A4249_RS15960 0.23 +0.2
3,221,166 - A4249_RS15960 0.50 +0.8
3,221,189 + A4249_RS15960 0.57 -0.3
3,221,190 - A4249_RS15960 0.58 +0.1
3,221,190 - A4249_RS15960 0.58 +0.2
3,221,190 - A4249_RS15960 0.58 +0.1
3,221,277 - A4249_RS15960 0.86 -0.4
3,221,429 + A4249_RS15965 0.19 -0.3
3,221,429 + A4249_RS15965 0.19 -0.1
3,221,429 + A4249_RS15965 0.19 -0.5
3,221,430 - A4249_RS15965 0.19 -0.6
3,221,430 - A4249_RS15965 0.19 -0.1
3,221,693 - A4249_RS15965 0.63 +2.2
3,221,806 + A4249_RS15965 0.82 +0.9

Or see this region's nucleotide sequence