Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15920 and A4249_RS15925 are separated by 140 nucleotides A4249_RS15925 and A4249_RS15930 are separated by 127 nucleotides
A4249_RS15920: A4249_RS15920 - Tol-Pal system beta propeller repeat protein TolB, at 3,211,394 to 3,212,758
_RS15920
A4249_RS15925: A4249_RS15925 - peptidoglycan-associated lipoprotein Pal, at 3,212,899 to 3,213,462
_RS15925
A4249_RS15930: A4249_RS15930 - DUF3667 domain-containing protein, at 3,213,590 to 3,214,732
_RS15930
Position (kb)
3212
3213
3214 Strain fitness (log2 ratio)
-2
-1
0
1 at 3212.756 kb on + strand at 3212.756 kb on + strand at 3212.785 kb on + strand at 3212.785 kb on + strand at 3212.786 kb on - strand at 3212.812 kb on + strand at 3212.843 kb on - strand at 3212.880 kb on + strand at 3212.880 kb on + strand at 3212.880 kb on + strand at 3213.593 kb on + strand at 3214.355 kb on + strand, within A4249_RS15930 at 3214.356 kb on - strand, within A4249_RS15930 at 3214.356 kb on - strand, within A4249_RS15930 at 3214.357 kb on + strand, within A4249_RS15930 at 3214.357 kb on + strand, within A4249_RS15930 at 3214.357 kb on + strand, within A4249_RS15930 at 3214.357 kb on + strand, within A4249_RS15930 at 3214.358 kb on - strand, within A4249_RS15930 at 3214.358 kb on - strand, within A4249_RS15930 at 3214.358 kb on - strand, within A4249_RS15930 at 3214.358 kb on - strand, within A4249_RS15930 at 3214.358 kb on - strand, within A4249_RS15930 at 3214.376 kb on + strand, within A4249_RS15930 at 3214.376 kb on + strand, within A4249_RS15930 at 3214.376 kb on + strand, within A4249_RS15930 at 3214.376 kb on + strand, within A4249_RS15930 at 3214.377 kb on - strand, within A4249_RS15930 at 3214.377 kb on - strand, within A4249_RS15930 at 3214.377 kb on - strand, within A4249_RS15930 at 3214.457 kb on + strand, within A4249_RS15930 at 3214.457 kb on + strand, within A4249_RS15930 at 3214.458 kb on - strand, within A4249_RS15930
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 3,212,756 + -0.2 3,212,756 + -0.2 3,212,785 + -0.3 3,212,785 + -0.6 3,212,786 - +0.3 3,212,812 + +0.1 3,212,843 - -0.2 3,212,880 + -1.6 3,212,880 + +1.7 3,212,880 + +0.6 3,213,593 + -0.1 3,214,355 + A4249_RS15930 0.67 -0.6 3,214,356 - A4249_RS15930 0.67 +0.9 3,214,356 - A4249_RS15930 0.67 -1.6 3,214,357 + A4249_RS15930 0.67 +0.1 3,214,357 + A4249_RS15930 0.67 +0.4 3,214,357 + A4249_RS15930 0.67 +0.2 3,214,357 + A4249_RS15930 0.67 +0.2 3,214,358 - A4249_RS15930 0.67 +0.9 3,214,358 - A4249_RS15930 0.67 -0.1 3,214,358 - A4249_RS15930 0.67 -1.2 3,214,358 - A4249_RS15930 0.67 -0.7 3,214,358 - A4249_RS15930 0.67 +0.5 3,214,376 + A4249_RS15930 0.69 +0.3 3,214,376 + A4249_RS15930 0.69 +0.3 3,214,376 + A4249_RS15930 0.69 +0.2 3,214,376 + A4249_RS15930 0.69 +0.8 3,214,377 - A4249_RS15930 0.69 -2.5 3,214,377 - A4249_RS15930 0.69 -0.3 3,214,377 - A4249_RS15930 0.69 +0.3 3,214,457 + A4249_RS15930 0.76 +0.1 3,214,457 + A4249_RS15930 0.76 -0.5 3,214,458 - A4249_RS15930 0.76 +0.3
Or see this region's nucleotide sequence