Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09050

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09045 and A4249_RS09050 are separated by 72 nucleotidesA4249_RS09050 and A4249_RS09055 are separated by 91 nucleotidesA4249_RS09055 and A4249_RS09060 are separated by 2 nucleotides A4249_RS09045: A4249_RS09045 - hypothetical protein, at 1,812,889 to 1,814,322 _RS09045 A4249_RS09050: A4249_RS09050 - WYL domain-containing protein, at 1,814,395 to 1,815,384 _RS09050 A4249_RS09055: A4249_RS09055 - hypothetical protein, at 1,815,476 to 1,815,700 _RS09055 A4249_RS09060: A4249_RS09060 - acyltransferase, at 1,815,703 to 1,816,710 _RS09060 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -2 -1 0 1at 1813.560 kb on + strand, within A4249_RS09045at 1813.561 kb on - strand, within A4249_RS09045at 1813.598 kb on + strand, within A4249_RS09045at 1813.599 kb on - strand, within A4249_RS09045at 1813.599 kb on - strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.601 kb on + strand, within A4249_RS09045at 1813.602 kb on - strand, within A4249_RS09045at 1813.602 kb on - strand, within A4249_RS09045at 1813.602 kb on - strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.721 kb on + strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.722 kb on - strand, within A4249_RS09045at 1813.943 kb on + strand, within A4249_RS09045at 1813.944 kb on - strand, within A4249_RS09045at 1814.033 kb on + strand, within A4249_RS09045at 1814.033 kb on + strand, within A4249_RS09045at 1814.033 kb on + strand, within A4249_RS09045at 1814.034 kb on - strand, within A4249_RS09045at 1814.034 kb on - strand, within A4249_RS09045at 1814.165 kb on + strand, within A4249_RS09045at 1814.166 kb on - strand, within A4249_RS09045at 1814.166 kb on - strand, within A4249_RS09045at 1814.275 kb on + strandat 1814.358 kb on - strandat 1814.386 kb on - strandat 1814.386 kb on - strandat 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.666 kb on + strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.667 kb on - strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.810 kb on + strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.811 kb on - strand, within A4249_RS09050at 1814.882 kb on + strand, within A4249_RS09050at 1814.882 kb on + strand, within A4249_RS09050at 1814.882 kb on + strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1814.883 kb on - strand, within A4249_RS09050at 1815.401 kb on + strandat 1815.402 kb on - strandat 1815.518 kb on + strand, within A4249_RS09055at 1815.518 kb on + strand, within A4249_RS09055at 1815.518 kb on + strand, within A4249_RS09055at 1815.519 kb on - strand, within A4249_RS09055at 1815.519 kb on - strand, within A4249_RS09055at 1815.626 kb on + strand, within A4249_RS09055at 1815.627 kb on - strand, within A4249_RS09055at 1815.901 kb on + strand, within A4249_RS09060at 1815.902 kb on - strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.923 kb on + strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1815.924 kb on - strand, within A4249_RS09060at 1816.184 kb on + strand, within A4249_RS09060at 1816.185 kb on - strand, within A4249_RS09060at 1816.185 kb on - strand, within A4249_RS09060at 1816.185 kb on - strand, within A4249_RS09060at 1816.185 kb on - strand, within A4249_RS09060at 1816.211 kb on + strand, within A4249_RS09060at 1816.211 kb on + strand, within A4249_RS09060at 1816.211 kb on + strand, within A4249_RS09060at 1816.211 kb on + strand, within A4249_RS09060at 1816.211 kb on + strand, within A4249_RS09060at 1816.212 kb on - strand, within A4249_RS09060at 1816.212 kb on - strand, within A4249_RS09060at 1816.212 kb on - strand, within A4249_RS09060at 1816.212 kb on - strand, within A4249_RS09060at 1816.218 kb on + strand, within A4249_RS09060at 1816.218 kb on + strand, within A4249_RS09060at 1816.219 kb on - strand, within A4249_RS09060at 1816.219 kb on - strand, within A4249_RS09060at 1816.219 kb on - strand, within A4249_RS09060at 1816.238 kb on + strand, within A4249_RS09060

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,813,560 + A4249_RS09045 0.47 +0.5
1,813,561 - A4249_RS09045 0.47 -0.4
1,813,598 + A4249_RS09045 0.49 -0.1
1,813,599 - A4249_RS09045 0.50 +0.3
1,813,599 - A4249_RS09045 0.50 +0.1
1,813,601 + A4249_RS09045 0.50 -0.4
1,813,601 + A4249_RS09045 0.50 +1.6
1,813,601 + A4249_RS09045 0.50 +0.2
1,813,601 + A4249_RS09045 0.50 -1.0
1,813,601 + A4249_RS09045 0.50 -0.3
1,813,601 + A4249_RS09045 0.50 -1.2
1,813,601 + A4249_RS09045 0.50 +0.2
1,813,601 + A4249_RS09045 0.50 -0.3
1,813,601 + A4249_RS09045 0.50 -0.1
1,813,601 + A4249_RS09045 0.50 -0.1
1,813,602 - A4249_RS09045 0.50 +0.4
1,813,602 - A4249_RS09045 0.50 -0.2
1,813,602 - A4249_RS09045 0.50 -1.4
1,813,721 + A4249_RS09045 0.58 +0.1
1,813,721 + A4249_RS09045 0.58 +0.2
1,813,721 + A4249_RS09045 0.58 +0.4
1,813,721 + A4249_RS09045 0.58 -0.6
1,813,721 + A4249_RS09045 0.58 +0.7
1,813,721 + A4249_RS09045 0.58 -0.2
1,813,721 + A4249_RS09045 0.58 +0.2
1,813,721 + A4249_RS09045 0.58 -0.2
1,813,721 + A4249_RS09045 0.58 -0.2
1,813,721 + A4249_RS09045 0.58 +1.5
1,813,721 + A4249_RS09045 0.58 +0.7
1,813,721 + A4249_RS09045 0.58 +0.3
1,813,721 + A4249_RS09045 0.58 -0.1
1,813,722 - A4249_RS09045 0.58 +0.4
1,813,722 - A4249_RS09045 0.58 -0.2
1,813,722 - A4249_RS09045 0.58 -0.7
1,813,722 - A4249_RS09045 0.58 -0.6
1,813,722 - A4249_RS09045 0.58 +0.6
1,813,722 - A4249_RS09045 0.58 -0.1
1,813,722 - A4249_RS09045 0.58 -0.1
1,813,722 - A4249_RS09045 0.58 -0.2
1,813,722 - A4249_RS09045 0.58 -0.9
1,813,722 - A4249_RS09045 0.58 -0.8
1,813,722 - A4249_RS09045 0.58 +0.1
1,813,722 - A4249_RS09045 0.58 -0.4
1,813,722 - A4249_RS09045 0.58 -1.3
1,813,722 - A4249_RS09045 0.58 +0.0
1,813,722 - A4249_RS09045 0.58 +0.7
1,813,722 - A4249_RS09045 0.58 -0.4
1,813,943 + A4249_RS09045 0.74 +0.3
1,813,944 - A4249_RS09045 0.74 +0.0
1,814,033 + A4249_RS09045 0.80 -0.2
1,814,033 + A4249_RS09045 0.80 -0.3
1,814,033 + A4249_RS09045 0.80 +0.9
1,814,034 - A4249_RS09045 0.80 -0.7
1,814,034 - A4249_RS09045 0.80 +0.1
1,814,165 + A4249_RS09045 0.89 -0.1
1,814,166 - A4249_RS09045 0.89 +0.1
1,814,166 - A4249_RS09045 0.89 +0.1
1,814,275 + +0.7
1,814,358 - +0.1
1,814,386 - -1.2
1,814,386 - +0.3
1,814,666 + A4249_RS09050 0.27 -0.6
1,814,666 + A4249_RS09050 0.27 +0.4
1,814,666 + A4249_RS09050 0.27 +0.1
1,814,666 + A4249_RS09050 0.27 -0.0
1,814,666 + A4249_RS09050 0.27 -0.2
1,814,666 + A4249_RS09050 0.27 +0.2
1,814,666 + A4249_RS09050 0.27 +0.1
1,814,666 + A4249_RS09050 0.27 +0.1
1,814,666 + A4249_RS09050 0.27 +0.3
1,814,667 - A4249_RS09050 0.27 +0.0
1,814,667 - A4249_RS09050 0.27 -0.6
1,814,667 - A4249_RS09050 0.27 +0.0
1,814,667 - A4249_RS09050 0.27 +0.2
1,814,667 - A4249_RS09050 0.27 +1.4
1,814,667 - A4249_RS09050 0.27 -0.2
1,814,667 - A4249_RS09050 0.27 -1.0
1,814,667 - A4249_RS09050 0.27 +0.0
1,814,667 - A4249_RS09050 0.27 +0.2
1,814,667 - A4249_RS09050 0.27 -0.3
1,814,667 - A4249_RS09050 0.27 -0.2
1,814,667 - A4249_RS09050 0.27 -0.2
1,814,667 - A4249_RS09050 0.27 -0.7
1,814,810 + A4249_RS09050 0.42 +0.3
1,814,810 + A4249_RS09050 0.42 +0.0
1,814,810 + A4249_RS09050 0.42 -1.2
1,814,810 + A4249_RS09050 0.42 -0.8
1,814,810 + A4249_RS09050 0.42 -0.6
1,814,810 + A4249_RS09050 0.42 -0.1
1,814,810 + A4249_RS09050 0.42 -0.6
1,814,810 + A4249_RS09050 0.42 +0.1
1,814,810 + A4249_RS09050 0.42 -0.0
1,814,810 + A4249_RS09050 0.42 +0.9
1,814,810 + A4249_RS09050 0.42 -0.1
1,814,810 + A4249_RS09050 0.42 +0.3
1,814,810 + A4249_RS09050 0.42 +0.9
1,814,810 + A4249_RS09050 0.42 +0.8
1,814,811 - A4249_RS09050 0.42 -0.1
1,814,811 - A4249_RS09050 0.42 -0.1
1,814,811 - A4249_RS09050 0.42 +0.8
1,814,811 - A4249_RS09050 0.42 -0.3
1,814,811 - A4249_RS09050 0.42 +0.6
1,814,811 - A4249_RS09050 0.42 +1.1
1,814,811 - A4249_RS09050 0.42 -0.6
1,814,882 + A4249_RS09050 0.49 -0.8
1,814,882 + A4249_RS09050 0.49 -0.2
1,814,882 + A4249_RS09050 0.49 -0.9
1,814,883 - A4249_RS09050 0.49 +0.7
1,814,883 - A4249_RS09050 0.49 -0.5
1,814,883 - A4249_RS09050 0.49 -0.2
1,814,883 - A4249_RS09050 0.49 -0.4
1,814,883 - A4249_RS09050 0.49 +0.6
1,815,401 + +0.6
1,815,402 - -0.4
1,815,518 + A4249_RS09055 0.19 +0.2
1,815,518 + A4249_RS09055 0.19 -0.1
1,815,518 + A4249_RS09055 0.19 +0.5
1,815,519 - A4249_RS09055 0.19 +0.2
1,815,519 - A4249_RS09055 0.19 -0.2
1,815,626 + A4249_RS09055 0.67 +0.3
1,815,627 - A4249_RS09055 0.67 +0.1
1,815,901 + A4249_RS09060 0.20 -0.5
1,815,902 - A4249_RS09060 0.20 -0.3
1,815,923 + A4249_RS09060 0.22 +0.8
1,815,923 + A4249_RS09060 0.22 +1.7
1,815,923 + A4249_RS09060 0.22 +0.6
1,815,923 + A4249_RS09060 0.22 +0.1
1,815,923 + A4249_RS09060 0.22 -1.0
1,815,923 + A4249_RS09060 0.22 +0.2
1,815,923 + A4249_RS09060 0.22 +1.3
1,815,923 + A4249_RS09060 0.22 +0.8
1,815,923 + A4249_RS09060 0.22 -0.7
1,815,924 - A4249_RS09060 0.22 -0.6
1,815,924 - A4249_RS09060 0.22 +1.0
1,815,924 - A4249_RS09060 0.22 -0.5
1,815,924 - A4249_RS09060 0.22 +1.5
1,815,924 - A4249_RS09060 0.22 +0.0
1,815,924 - A4249_RS09060 0.22 +0.4
1,815,924 - A4249_RS09060 0.22 -0.2
1,815,924 - A4249_RS09060 0.22 +1.2
1,815,924 - A4249_RS09060 0.22 -0.5
1,815,924 - A4249_RS09060 0.22 +0.4
1,816,184 + A4249_RS09060 0.48 -0.4
1,816,185 - A4249_RS09060 0.48 +0.6
1,816,185 - A4249_RS09060 0.48 -1.9
1,816,185 - A4249_RS09060 0.48 -0.3
1,816,185 - A4249_RS09060 0.48 +0.3
1,816,211 + A4249_RS09060 0.50 +0.6
1,816,211 + A4249_RS09060 0.50 -0.0
1,816,211 + A4249_RS09060 0.50 -0.0
1,816,211 + A4249_RS09060 0.50 -0.9
1,816,211 + A4249_RS09060 0.50 -1.0
1,816,212 - A4249_RS09060 0.50 -0.0
1,816,212 - A4249_RS09060 0.50 +0.2
1,816,212 - A4249_RS09060 0.50 -0.2
1,816,212 - A4249_RS09060 0.50 -1.1
1,816,218 + A4249_RS09060 0.51 +0.1
1,816,218 + A4249_RS09060 0.51 -0.2
1,816,219 - A4249_RS09060 0.51 -0.4
1,816,219 - A4249_RS09060 0.51 +0.5
1,816,219 - A4249_RS09060 0.51 +0.3
1,816,238 + A4249_RS09060 0.53 -1.8

Or see this region's nucleotide sequence