Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06200

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06195 and A4249_RS06200 are separated by 56 nucleotidesA4249_RS06200 and A4249_RS06205 are separated by 125 nucleotides A4249_RS06195: A4249_RS06195 - citrate synthase, at 1,261,638 to 1,262,939 _RS06195 A4249_RS06200: A4249_RS06200 - FUSC family protein, at 1,262,996 to 1,263,865 _RS06200 A4249_RS06205: A4249_RS06205 - lipid-A-disaccharide synthase, at 1,263,991 to 1,265,160 _RS06205 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -2 -1 0 1at 1262.987 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.052 kb on + strandat 1263.053 kb on - strandat 1263.053 kb on - strandat 1263.053 kb on - strandat 1263.053 kb on - strandat 1263.053 kb on - strandat 1263.053 kb on - strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.870 kb on + strandat 1263.871 kb on - strandat 1263.871 kb on - strandat 1263.871 kb on - strandat 1263.871 kb on - strandat 1263.871 kb on - strandat 1263.873 kb on + strandat 1263.874 kb on - strandat 1263.906 kb on + strandat 1263.906 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,262,987 + +0.2
1,263,052 + -1.4
1,263,052 + +0.3
1,263,052 + +0.3
1,263,052 + -0.9
1,263,052 + +0.2
1,263,052 + +0.6
1,263,052 + +1.1
1,263,052 + -0.5
1,263,053 - +0.2
1,263,053 - -0.1
1,263,053 - -0.5
1,263,053 - -0.2
1,263,053 - -0.1
1,263,053 - -0.1
1,263,870 + -0.2
1,263,870 + -0.3
1,263,870 + -0.2
1,263,870 + +0.1
1,263,870 + -0.0
1,263,870 + -0.3
1,263,870 + +0.5
1,263,870 + -0.4
1,263,870 + +0.4
1,263,871 - -0.3
1,263,871 - +1.6
1,263,871 - +1.0
1,263,871 - -0.5
1,263,871 - -1.8
1,263,873 + -0.4
1,263,874 - +0.6
1,263,906 + +0.9
1,263,906 + -0.5

Or see this region's nucleotide sequence