Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05930

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05920 and A4249_RS05925 are separated by 101 nucleotidesA4249_RS05925 and A4249_RS05930 are separated by 2 nucleotidesA4249_RS05930 and A4249_RS05935 are separated by 262 nucleotides A4249_RS05920: A4249_RS05920 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,210,846 to 1,211,796 _RS05920 A4249_RS05925: A4249_RS05925 - 30S ribosomal protein S9, at 1,211,898 to 1,212,392 _RS05925 A4249_RS05930: A4249_RS05930 - 50S ribosomal protein L13, at 1,212,395 to 1,212,871 _RS05930 A4249_RS05935: A4249_RS05935 - DUF839 domain-containing protein, at 1,213,134 to 1,214,519 _RS05935 Position (kb) 1212 1213Strain fitness (log2 ratio) -1 0 1at 1211.450 kb on + strand, within A4249_RS05920at 1211.450 kb on + strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.451 kb on - strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.525 kb on + strand, within A4249_RS05920at 1211.526 kb on - strand, within A4249_RS05920at 1211.823 kb on - strandat 1211.823 kb on - strandat 1213.070 kb on + strandat 1213.071 kb on - strandat 1213.092 kb on + strandat 1213.093 kb on - strandat 1213.093 kb on - strandat 1213.094 kb on + strandat 1213.094 kb on + strandat 1213.094 kb on + strandat 1213.095 kb on - strandat 1213.095 kb on - strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.233 kb on + strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.234 kb on - strandat 1213.311 kb on + strand, within A4249_RS05935at 1213.312 kb on - strand, within A4249_RS05935at 1213.312 kb on - strand, within A4249_RS05935at 1213.338 kb on - strand, within A4249_RS05935at 1213.521 kb on + strand, within A4249_RS05935at 1213.521 kb on + strand, within A4249_RS05935at 1213.521 kb on + strand, within A4249_RS05935at 1213.521 kb on + strand, within A4249_RS05935at 1213.521 kb on + strand, within A4249_RS05935at 1213.521 kb on + strand, within A4249_RS05935at 1213.522 kb on - strand, within A4249_RS05935at 1213.522 kb on - strand, within A4249_RS05935at 1213.522 kb on - strand, within A4249_RS05935at 1213.530 kb on + strand, within A4249_RS05935at 1213.530 kb on + strand, within A4249_RS05935at 1213.530 kb on + strand, within A4249_RS05935at 1213.530 kb on + strand, within A4249_RS05935at 1213.530 kb on + strand, within A4249_RS05935at 1213.530 kb on + strand, within A4249_RS05935at 1213.531 kb on - strand, within A4249_RS05935at 1213.531 kb on - strand, within A4249_RS05935at 1213.531 kb on - strand, within A4249_RS05935at 1213.531 kb on - strand, within A4249_RS05935at 1213.531 kb on - strand, within A4249_RS05935at 1213.532 kb on + strand, within A4249_RS05935at 1213.532 kb on + strand, within A4249_RS05935at 1213.532 kb on + strand, within A4249_RS05935at 1213.533 kb on - strand, within A4249_RS05935at 1213.533 kb on - strand, within A4249_RS05935at 1213.533 kb on - strand, within A4249_RS05935at 1213.533 kb on - strand, within A4249_RS05935at 1213.533 kb on - strand, within A4249_RS05935at 1213.533 kb on - strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.575 kb on + strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.576 kb on - strand, within A4249_RS05935at 1213.845 kb on + strand, within A4249_RS05935at 1213.845 kb on + strand, within A4249_RS05935at 1213.845 kb on + strand, within A4249_RS05935at 1213.846 kb on - strand, within A4249_RS05935at 1213.846 kb on - strand, within A4249_RS05935at 1213.846 kb on - strand, within A4249_RS05935

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,211,450 + A4249_RS05920 0.64 -0.3
1,211,450 + A4249_RS05920 0.64 -0.2
1,211,451 - A4249_RS05920 0.64 -0.1
1,211,451 - A4249_RS05920 0.64 -0.1
1,211,451 - A4249_RS05920 0.64 +0.5
1,211,525 + A4249_RS05920 0.71 -0.7
1,211,525 + A4249_RS05920 0.71 +0.2
1,211,525 + A4249_RS05920 0.71 -0.2
1,211,525 + A4249_RS05920 0.71 -0.0
1,211,526 - A4249_RS05920 0.72 -0.1
1,211,823 - -0.2
1,211,823 - -0.2
1,213,070 + -0.2
1,213,071 - +0.3
1,213,092 + -0.5
1,213,093 - +0.7
1,213,093 - +0.4
1,213,094 + -0.1
1,213,094 + +0.1
1,213,094 + -0.0
1,213,095 - -0.8
1,213,095 - +0.0
1,213,233 + +0.2
1,213,233 + +0.1
1,213,233 + -0.5
1,213,233 + -0.4
1,213,233 + -1.5
1,213,233 + +0.3
1,213,233 + -0.8
1,213,233 + -0.0
1,213,233 + +0.0
1,213,233 + +0.1
1,213,233 + -0.8
1,213,233 + +1.1
1,213,234 - -0.1
1,213,234 - -0.5
1,213,234 - +0.5
1,213,234 - +0.3
1,213,234 - -0.5
1,213,234 - -0.8
1,213,234 - -0.4
1,213,234 - +0.4
1,213,234 - +0.4
1,213,311 + A4249_RS05935 0.13 +0.3
1,213,312 - A4249_RS05935 0.13 +0.3
1,213,312 - A4249_RS05935 0.13 -0.5
1,213,338 - A4249_RS05935 0.15 +0.8
1,213,521 + A4249_RS05935 0.28 +0.9
1,213,521 + A4249_RS05935 0.28 +0.4
1,213,521 + A4249_RS05935 0.28 +0.9
1,213,521 + A4249_RS05935 0.28 -0.5
1,213,521 + A4249_RS05935 0.28 +0.4
1,213,521 + A4249_RS05935 0.28 +0.1
1,213,522 - A4249_RS05935 0.28 -1.1
1,213,522 - A4249_RS05935 0.28 +0.5
1,213,522 - A4249_RS05935 0.28 +0.5
1,213,530 + A4249_RS05935 0.29 -0.0
1,213,530 + A4249_RS05935 0.29 -1.0
1,213,530 + A4249_RS05935 0.29 +0.3
1,213,530 + A4249_RS05935 0.29 -0.9
1,213,530 + A4249_RS05935 0.29 -0.2
1,213,530 + A4249_RS05935 0.29 -0.7
1,213,531 - A4249_RS05935 0.29 -0.9
1,213,531 - A4249_RS05935 0.29 +0.2
1,213,531 - A4249_RS05935 0.29 +1.2
1,213,531 - A4249_RS05935 0.29 +0.1
1,213,531 - A4249_RS05935 0.29 -0.2
1,213,532 + A4249_RS05935 0.29 -1.1
1,213,532 + A4249_RS05935 0.29 -0.2
1,213,532 + A4249_RS05935 0.29 +0.6
1,213,533 - A4249_RS05935 0.29 -0.2
1,213,533 - A4249_RS05935 0.29 +1.6
1,213,533 - A4249_RS05935 0.29 +0.1
1,213,533 - A4249_RS05935 0.29 -0.1
1,213,533 - A4249_RS05935 0.29 -0.5
1,213,533 - A4249_RS05935 0.29 -0.8
1,213,575 + A4249_RS05935 0.32 -0.4
1,213,575 + A4249_RS05935 0.32 +1.0
1,213,575 + A4249_RS05935 0.32 +0.0
1,213,575 + A4249_RS05935 0.32 -0.1
1,213,575 + A4249_RS05935 0.32 -0.6
1,213,575 + A4249_RS05935 0.32 +0.9
1,213,575 + A4249_RS05935 0.32 -0.2
1,213,575 + A4249_RS05935 0.32 +0.1
1,213,575 + A4249_RS05935 0.32 -0.2
1,213,575 + A4249_RS05935 0.32 -1.1
1,213,575 + A4249_RS05935 0.32 +0.2
1,213,575 + A4249_RS05935 0.32 -0.5
1,213,575 + A4249_RS05935 0.32 -0.0
1,213,576 - A4249_RS05935 0.32 +0.5
1,213,576 - A4249_RS05935 0.32 +0.4
1,213,576 - A4249_RS05935 0.32 -0.1
1,213,576 - A4249_RS05935 0.32 -0.6
1,213,576 - A4249_RS05935 0.32 +0.7
1,213,576 - A4249_RS05935 0.32 +0.0
1,213,576 - A4249_RS05935 0.32 +0.7
1,213,576 - A4249_RS05935 0.32 +1.1
1,213,576 - A4249_RS05935 0.32 -0.7
1,213,576 - A4249_RS05935 0.32 -1.4
1,213,576 - A4249_RS05935 0.32 +0.3
1,213,576 - A4249_RS05935 0.32 -0.1
1,213,576 - A4249_RS05935 0.32 +0.6
1,213,576 - A4249_RS05935 0.32 -1.4
1,213,576 - A4249_RS05935 0.32 +0.8
1,213,845 + A4249_RS05935 0.51 -0.1
1,213,845 + A4249_RS05935 0.51 -0.5
1,213,845 + A4249_RS05935 0.51 +0.7
1,213,846 - A4249_RS05935 0.51 -0.1
1,213,846 - A4249_RS05935 0.51 +0.6
1,213,846 - A4249_RS05935 0.51 -0.2

Or see this region's nucleotide sequence