Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS05880 and A4249_RS05885 are separated by 21 nucleotides A4249_RS05885 and A4249_RS05890 are separated by 219 nucleotides A4249_RS05890 and A4249_RS05895 are separated by 78 nucleotides A4249_RS05895 and A4249_RS05900 are separated by 39 nucleotides A4249_RS05900 and A4249_RS05905 are separated by 106 nucleotides
A4249_RS05880: A4249_RS05880 - DUF192 domain-containing protein, at 1,204,196 to 1,204,675
_RS05880
A4249_RS05885: A4249_RS05885 - cold-shock protein, at 1,204,697 to 1,205,236
_RS05885
A4249_RS05890: A4249_RS05890 - tRNA-Glu, at 1,205,456 to 1,205,530
_RS05890
A4249_RS05895: A4249_RS05895 - single-stranded-DNA-specific exonuclease RecJ, at 1,205,609 to 1,207,420
_RS05895
A4249_RS05900: A4249_RS05900 - hypothetical protein, at 1,207,460 to 1,207,885
_RS05900
A4249_RS05905: A4249_RS05905 - class I poly(R)-hydroxyalkanoic acid synthase, at 1,207,992 to 1,209,932
_RS05905
Position (kb) 1205
1206
1207
1208 Strain fitness (log2 ratio) -2
-1
0
1 at 1204.675 kb on + strand at 1204.675 kb on + strand at 1204.675 kb on + strand at 1204.675 kb on + strand at 1204.675 kb on + strand at 1204.675 kb on + strand at 1204.675 kb on + strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.676 kb on - strand at 1204.825 kb on + strand, within A4249_RS05885 at 1204.825 kb on + strand, within A4249_RS05885 at 1204.825 kb on + strand, within A4249_RS05885 at 1204.826 kb on - strand, within A4249_RS05885 at 1205.095 kb on + strand, within A4249_RS05885 at 1205.095 kb on + strand, within A4249_RS05885 at 1205.095 kb on + strand, within A4249_RS05885 at 1205.096 kb on - strand, within A4249_RS05885 at 1205.096 kb on - strand, within A4249_RS05885 at 1205.096 kb on - strand, within A4249_RS05885 at 1205.096 kb on - strand, within A4249_RS05885 at 1205.154 kb on + strand, within A4249_RS05885 at 1205.225 kb on - strand at 1205.238 kb on + strand at 1205.238 kb on + strand at 1205.238 kb on + strand at 1205.238 kb on + strand at 1205.238 kb on + strand at 1205.239 kb on - strand at 1205.239 kb on - strand at 1205.239 kb on - strand at 1205.239 kb on - strand at 1205.239 kb on - strand at 1205.239 kb on - strand at 1205.239 kb on - strand at 1205.275 kb on - strand at 1205.277 kb on - strand at 1205.277 kb on - strand at 1205.280 kb on + strand at 1205.280 kb on + strand at 1205.280 kb on + strand at 1205.280 kb on + strand at 1205.281 kb on - strand at 1205.281 kb on - strand at 1205.323 kb on + strand at 1205.324 kb on - strand at 1205.398 kb on + strand at 1205.398 kb on + strand at 1205.398 kb on + strand at 1205.399 kb on - strand at 1205.399 kb on - strand at 1205.407 kb on + strand at 1205.407 kb on + strand at 1205.407 kb on + strand at 1205.407 kb on + strand at 1205.408 kb on - strand at 1205.408 kb on - strand at 1205.408 kb on - strand at 1205.408 kb on - strand at 1205.408 kb on - strand at 1205.408 kb on - strand at 1205.408 kb on - strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.442 kb on + strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1205.443 kb on - strand at 1207.429 kb on + strand at 1207.430 kb on - strand at 1207.775 kb on + strand, within A4249_RS05900 at 1207.775 kb on + strand, within A4249_RS05900 at 1207.775 kb on + strand, within A4249_RS05900 at 1207.775 kb on + strand, within A4249_RS05900 at 1207.776 kb on - strand, within A4249_RS05900 at 1207.776 kb on - strand, within A4249_RS05900 at 1207.786 kb on + strand, within A4249_RS05900 at 1207.787 kb on - strand, within A4249_RS05900 at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.924 kb on + strand at 1207.925 kb on - strand at 1207.925 kb on - strand at 1207.925 kb on - strand at 1207.925 kb on - strand at 1207.925 kb on - strand at 1207.925 kb on - strand at 1207.925 kb on - strand at 1208.391 kb on + strand, within A4249_RS05905 at 1208.391 kb on + strand, within A4249_RS05905 at 1208.391 kb on + strand, within A4249_RS05905 at 1208.391 kb on + strand, within A4249_RS05905 at 1208.391 kb on + strand, within A4249_RS05905 at 1208.391 kb on + strand, within A4249_RS05905 at 1208.391 kb on + strand, within A4249_RS05905 at 1208.392 kb on - strand, within A4249_RS05905 at 1208.392 kb on - strand, within A4249_RS05905 at 1208.392 kb on - strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.393 kb on + strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905 at 1208.394 kb on - strand, within A4249_RS05905
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 1,204,675 + -2.1 1,204,675 + -1.3 1,204,675 + -0.7 1,204,675 + +1.6 1,204,675 + -0.9 1,204,675 + +0.2 1,204,675 + +1.1 1,204,676 - -1.0 1,204,676 - -0.7 1,204,676 - -0.3 1,204,676 - +0.3 1,204,676 - +0.1 1,204,676 - +0.1 1,204,676 - +0.2 1,204,676 - -0.6 1,204,825 + A4249_RS05885 0.24 -1.0 1,204,825 + A4249_RS05885 0.24 +0.2 1,204,825 + A4249_RS05885 0.24 +1.2 1,204,826 - A4249_RS05885 0.24 -0.1 1,205,095 + A4249_RS05885 0.74 -0.3 1,205,095 + A4249_RS05885 0.74 -1.4 1,205,095 + A4249_RS05885 0.74 +1.1 1,205,096 - A4249_RS05885 0.74 -0.5 1,205,096 - A4249_RS05885 0.74 -0.0 1,205,096 - A4249_RS05885 0.74 +0.4 1,205,096 - A4249_RS05885 0.74 -0.4 1,205,154 + A4249_RS05885 0.85 +0.2 1,205,225 - -0.3 1,205,238 + -0.3 1,205,238 + -1.3 1,205,238 + +0.0 1,205,238 + -0.1 1,205,238 + -0.2 1,205,239 - +0.1 1,205,239 - -0.9 1,205,239 - -0.3 1,205,239 - -2.2 1,205,239 - -0.4 1,205,239 - +0.2 1,205,239 - -0.3 1,205,275 - +0.4 1,205,277 - +0.8 1,205,277 - +1.3 1,205,280 + -1.4 1,205,280 + -1.0 1,205,280 + -0.3 1,205,280 + -0.8 1,205,281 - -0.4 1,205,281 - -0.2 1,205,323 + +1.4 1,205,324 - -0.1 1,205,398 + -1.0 1,205,398 + +0.3 1,205,398 + -0.2 1,205,399 - +0.3 1,205,399 - +0.2 1,205,407 + -0.3 1,205,407 + -0.6 1,205,407 + -0.0 1,205,407 + -0.6 1,205,408 - -0.4 1,205,408 - -0.3 1,205,408 - +0.4 1,205,408 - -0.3 1,205,408 - +0.5 1,205,408 - -0.1 1,205,408 - +0.1 1,205,442 + -1.3 1,205,442 + -0.2 1,205,442 + -0.2 1,205,442 + -0.7 1,205,442 + +0.1 1,205,442 + -0.3 1,205,442 + -0.1 1,205,442 + +0.7 1,205,442 + +0.2 1,205,442 + +1.4 1,205,443 - +0.5 1,205,443 - -0.0 1,205,443 - -0.0 1,205,443 - -0.4 1,205,443 - +0.4 1,205,443 - -0.1 1,205,443 - -0.3 1,205,443 - -0.2 1,205,443 - -0.2 1,207,429 + -0.2 1,207,430 - +1.4 1,207,775 + A4249_RS05900 0.74 +0.4 1,207,775 + A4249_RS05900 0.74 -0.7 1,207,775 + A4249_RS05900 0.74 +0.1 1,207,775 + A4249_RS05900 0.74 -1.2 1,207,776 - A4249_RS05900 0.74 -2.4 1,207,776 - A4249_RS05900 0.74 -0.4 1,207,786 + A4249_RS05900 0.77 +1.0 1,207,787 - A4249_RS05900 0.77 +0.2 1,207,924 + +1.1 1,207,924 + -0.5 1,207,924 + -0.5 1,207,924 + +0.6 1,207,924 + +0.3 1,207,924 + -1.0 1,207,924 + -0.7 1,207,924 + +0.8 1,207,924 + +0.0 1,207,924 + +0.1 1,207,925 - +0.8 1,207,925 - +0.0 1,207,925 - +0.6 1,207,925 - +1.5 1,207,925 - -0.3 1,207,925 - +0.3 1,207,925 - +0.7 1,208,391 + A4249_RS05905 0.21 -0.3 1,208,391 + A4249_RS05905 0.21 +0.2 1,208,391 + A4249_RS05905 0.21 +0.5 1,208,391 + A4249_RS05905 0.21 -0.4 1,208,391 + A4249_RS05905 0.21 -0.1 1,208,391 + A4249_RS05905 0.21 +0.5 1,208,391 + A4249_RS05905 0.21 +0.4 1,208,392 - A4249_RS05905 0.21 +0.2 1,208,392 - A4249_RS05905 0.21 -0.4 1,208,392 - A4249_RS05905 0.21 +0.4 1,208,393 + A4249_RS05905 0.21 +0.5 1,208,393 + A4249_RS05905 0.21 -0.2 1,208,393 + A4249_RS05905 0.21 -0.2 1,208,393 + A4249_RS05905 0.21 -1.1 1,208,393 + A4249_RS05905 0.21 -0.3 1,208,393 + A4249_RS05905 0.21 +0.0 1,208,393 + A4249_RS05905 0.21 +0.3 1,208,393 + A4249_RS05905 0.21 +0.0 1,208,393 + A4249_RS05905 0.21 +0.0 1,208,393 + A4249_RS05905 0.21 -1.8 1,208,393 + A4249_RS05905 0.21 -2.6 1,208,393 + A4249_RS05905 0.21 -0.2 1,208,394 - A4249_RS05905 0.21 +0.2 1,208,394 - A4249_RS05905 0.21 -0.5 1,208,394 - A4249_RS05905 0.21 +0.1 1,208,394 - A4249_RS05905 0.21 -0.7 1,208,394 - A4249_RS05905 0.21 -0.4 1,208,394 - A4249_RS05905 0.21 +1.2 1,208,394 - A4249_RS05905 0.21 -0.1 1,208,394 - A4249_RS05905 0.21 -1.0
Or see this region's nucleotide sequence