Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04545 and A4249_RS04550 are separated by 4 nucleotides A4249_RS04550 and A4249_RS04555 are separated by 41 nucleotides A4249_RS04555 and A4249_RS04560 are separated by 85 nucleotides A4249_RS04560 and A4249_RS04565 are separated by 158 nucleotides
A4249_RS04545: A4249_RS04545 - alkyl hydroperoxide reductase subunit F, at 943,703 to 945,292
_RS04545
A4249_RS04550: A4249_RS04550 - YdeI/OmpD-associated family protein, at 945,297 to 945,551
_RS04550
A4249_RS04555: A4249_RS04555 - transporter, at 945,593 to 946,405
_RS04555
A4249_RS04560: A4249_RS04560 - alpha/beta hydrolase, at 946,491 to 947,141
_RS04560
A4249_RS04565: A4249_RS04565 - Rrf2 family transcriptional regulator, at 947,300 to 947,779
_RS04565
Position (kb) 945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.711 kb on + strand, within A4249_RS04545 at 944.711 kb on + strand, within A4249_RS04545 at 944.712 kb on - strand, within A4249_RS04545 at 944.732 kb on + strand, within A4249_RS04545 at 944.732 kb on + strand, within A4249_RS04545 at 944.858 kb on + strand, within A4249_RS04545 at 944.859 kb on - strand, within A4249_RS04545 at 944.859 kb on - strand, within A4249_RS04545 at 944.987 kb on + strand, within A4249_RS04545 at 944.987 kb on + strand, within A4249_RS04545 at 944.987 kb on + strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 944.988 kb on - strand, within A4249_RS04545 at 945.182 kb on + strand at 945.182 kb on + strand at 945.182 kb on + strand at 945.182 kb on + strand at 945.183 kb on - strand at 945.183 kb on - strand at 945.183 kb on - strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.184 kb on + strand at 945.185 kb on - strand at 945.185 kb on - strand at 945.185 kb on - strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.242 kb on + strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.243 kb on - strand at 945.299 kb on - strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.555 kb on + strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.556 kb on - strand at 945.595 kb on - strand at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.826 kb on + strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.827 kb on - strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.828 kb on + strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 945.829 kb on - strand, within A4249_RS04555 at 946.477 kb on + strand at 947.184 kb on - strand at 947.256 kb on + strand at 947.256 kb on + strand at 947.257 kb on - strand at 947.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 944,711 + A4249_RS04545 0.63 +0.2 944,711 + A4249_RS04545 0.63 +0.4 944,712 - A4249_RS04545 0.63 +0.4 944,732 + A4249_RS04545 0.65 +0.5 944,732 + A4249_RS04545 0.65 +0.7 944,858 + A4249_RS04545 0.73 +0.3 944,859 - A4249_RS04545 0.73 +0.8 944,859 - A4249_RS04545 0.73 -0.1 944,987 + A4249_RS04545 0.81 -0.1 944,987 + A4249_RS04545 0.81 +0.2 944,987 + A4249_RS04545 0.81 -0.7 944,988 - A4249_RS04545 0.81 -0.4 944,988 - A4249_RS04545 0.81 +1.0 944,988 - A4249_RS04545 0.81 -0.2 944,988 - A4249_RS04545 0.81 -0.9 945,182 + -1.1 945,182 + +0.5 945,182 + +0.4 945,182 + -0.2 945,183 - +0.2 945,183 - +1.0 945,183 - -0.1 945,184 + -0.2 945,184 + +0.0 945,184 + -0.7 945,184 + -0.1 945,184 + +0.0 945,185 - +0.5 945,185 - -0.5 945,185 - +0.1 945,242 + +0.7 945,242 + -0.2 945,242 + +0.3 945,242 + -0.1 945,242 + +0.8 945,243 - -0.9 945,243 - +0.0 945,243 - +0.3 945,243 - -1.8 945,243 - +0.4 945,243 - -1.2 945,243 - -2.3 945,243 - -0.5 945,243 - +1.2 945,299 - +0.1 945,555 + +0.6 945,555 + -0.9 945,555 + +0.3 945,555 + +0.1 945,555 + +0.3 945,555 + +0.2 945,555 + +2.7 945,555 + -0.2 945,555 + +0.1 945,556 - -0.2 945,556 - -0.4 945,556 - -0.9 945,556 - -0.3 945,556 - -0.6 945,556 - -0.1 945,595 - -1.1 945,826 + A4249_RS04555 0.29 +0.9 945,826 + A4249_RS04555 0.29 -0.4 945,826 + A4249_RS04555 0.29 -0.3 945,826 + A4249_RS04555 0.29 -0.1 945,826 + A4249_RS04555 0.29 -0.2 945,826 + A4249_RS04555 0.29 -0.8 945,826 + A4249_RS04555 0.29 +0.9 945,826 + A4249_RS04555 0.29 +0.6 945,826 + A4249_RS04555 0.29 +0.0 945,826 + A4249_RS04555 0.29 -1.0 945,827 - A4249_RS04555 0.29 +0.0 945,827 - A4249_RS04555 0.29 -0.4 945,827 - A4249_RS04555 0.29 +0.3 945,827 - A4249_RS04555 0.29 +1.3 945,827 - A4249_RS04555 0.29 +1.1 945,827 - A4249_RS04555 0.29 -0.4 945,827 - A4249_RS04555 0.29 +0.1 945,827 - A4249_RS04555 0.29 +0.4 945,827 - A4249_RS04555 0.29 +0.6 945,828 + A4249_RS04555 0.29 -0.4 945,828 + A4249_RS04555 0.29 -0.3 945,828 + A4249_RS04555 0.29 +0.4 945,829 - A4249_RS04555 0.29 -0.7 945,829 - A4249_RS04555 0.29 +1.5 945,829 - A4249_RS04555 0.29 -0.0 945,829 - A4249_RS04555 0.29 +0.0 945,829 - A4249_RS04555 0.29 +0.0 946,477 + -0.4 947,184 - -0.5 947,256 + +0.4 947,256 + -1.2 947,257 - -0.4 947,257 - -0.5
Or see this region's nucleotide sequence