Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03485 and A4249_RS03490 are separated by 454 nucleotides A4249_RS03490 and A4249_RS03495 are separated by 96 nucleotides A4249_RS03495 and A4249_RS03500 are separated by 2 nucleotides
A4249_RS03485: A4249_RS03485 - SDR family NAD(P)-dependent oxidoreductase, at 726,384 to 726,899
_RS03485
A4249_RS03490: A4249_RS03490 - LysR family transcriptional regulator, at 727,354 to 728,232
_RS03490
A4249_RS03495: A4249_RS03495 - type 1 glutamine amidotransferase domain-containing protein, at 728,329 to 729,138
_RS03495
A4249_RS03500: A4249_RS03500 - VOC family protein, at 729,141 to 729,596
_RS03500
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 726.443 kb on + strand, within A4249_RS03485 at 726.443 kb on + strand, within A4249_RS03485 at 726.444 kb on - strand, within A4249_RS03485 at 726.444 kb on - strand, within A4249_RS03485 at 726.444 kb on - strand, within A4249_RS03485 at 726.444 kb on - strand, within A4249_RS03485 at 726.485 kb on + strand, within A4249_RS03485 at 726.485 kb on + strand, within A4249_RS03485 at 726.485 kb on + strand, within A4249_RS03485 at 726.486 kb on - strand, within A4249_RS03485 at 726.486 kb on - strand, within A4249_RS03485 at 726.486 kb on - strand, within A4249_RS03485 at 726.486 kb on - strand, within A4249_RS03485 at 726.564 kb on + strand, within A4249_RS03485 at 726.564 kb on + strand, within A4249_RS03485 at 726.564 kb on + strand, within A4249_RS03485 at 726.564 kb on + strand, within A4249_RS03485 at 726.564 kb on + strand, within A4249_RS03485 at 726.565 kb on - strand, within A4249_RS03485 at 726.565 kb on - strand, within A4249_RS03485 at 726.759 kb on + strand, within A4249_RS03485 at 726.759 kb on + strand, within A4249_RS03485 at 726.760 kb on - strand, within A4249_RS03485 at 726.897 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.989 kb on + strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 726.990 kb on - strand at 727.020 kb on + strand at 727.021 kb on - strand at 727.074 kb on + strand at 727.074 kb on + strand at 727.074 kb on + strand at 727.074 kb on + strand at 727.075 kb on - strand at 727.075 kb on - strand at 727.075 kb on - strand at 727.075 kb on - strand at 727.075 kb on - strand at 727.075 kb on - strand at 727.131 kb on + strand at 727.131 kb on + strand at 727.132 kb on - strand at 727.132 kb on - strand at 727.217 kb on + strand at 727.217 kb on + strand at 727.217 kb on + strand at 727.217 kb on + strand at 727.218 kb on - strand at 727.261 kb on - strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.355 kb on + strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.356 kb on - strand at 727.436 kb on + strand at 727.436 kb on + strand at 727.436 kb on + strand at 727.436 kb on + strand at 727.436 kb on + strand at 727.437 kb on - strand at 727.437 kb on - strand at 727.437 kb on - strand at 727.437 kb on - strand at 727.437 kb on - strand at 727.437 kb on - strand at 727.437 kb on - strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.439 kb on + strand at 727.440 kb on - strand at 727.440 kb on - strand at 727.440 kb on - strand at 727.472 kb on - strand, within A4249_RS03490 at 727.515 kb on - strand, within A4249_RS03490 at 727.565 kb on - strand, within A4249_RS03490 at 727.658 kb on + strand, within A4249_RS03490 at 727.659 kb on - strand, within A4249_RS03490 at 727.841 kb on + strand, within A4249_RS03490 at 727.841 kb on + strand, within A4249_RS03490 at 727.841 kb on + strand, within A4249_RS03490 at 727.841 kb on + strand, within A4249_RS03490 at 727.841 kb on + strand, within A4249_RS03490 at 727.842 kb on - strand, within A4249_RS03490 at 727.842 kb on - strand, within A4249_RS03490 at 727.842 kb on - strand, within A4249_RS03490 at 727.842 kb on - strand, within A4249_RS03490 at 727.842 kb on - strand, within A4249_RS03490 at 727.842 kb on - strand, within A4249_RS03490 at 728.195 kb on + strand at 728.196 kb on - strand at 728.301 kb on + strand at 728.301 kb on + strand at 728.301 kb on + strand at 728.301 kb on + strand at 728.301 kb on + strand at 728.301 kb on + strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.302 kb on - strand at 728.305 kb on + strand at 728.305 kb on + strand at 728.305 kb on + strand at 728.305 kb on + strand at 728.305 kb on + strand at 728.306 kb on - strand at 728.306 kb on - strand at 728.526 kb on + strand, within A4249_RS03495 at 728.526 kb on + strand, within A4249_RS03495 at 728.526 kb on + strand, within A4249_RS03495 at 728.526 kb on + strand, within A4249_RS03495 at 728.526 kb on + strand, within A4249_RS03495 at 728.526 kb on + strand, within A4249_RS03495 at 728.527 kb on - strand, within A4249_RS03495 at 728.527 kb on - strand, within A4249_RS03495 at 728.527 kb on - strand, within A4249_RS03495 at 728.527 kb on - strand, within A4249_RS03495 at 728.527 kb on - strand, within A4249_RS03495 at 728.527 kb on - strand, within A4249_RS03495 at 728.528 kb on - strand, within A4249_RS03495 at 728.536 kb on + strand, within A4249_RS03495 at 728.536 kb on + strand, within A4249_RS03495 at 728.536 kb on + strand, within A4249_RS03495 at 728.537 kb on - strand, within A4249_RS03495 at 728.537 kb on - strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.539 kb on + strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.540 kb on - strand, within A4249_RS03495 at 728.656 kb on + strand, within A4249_RS03495 at 728.656 kb on + strand, within A4249_RS03495 at 728.656 kb on + strand, within A4249_RS03495 at 728.661 kb on + strand, within A4249_RS03495 at 728.688 kb on + strand, within A4249_RS03495 at 728.689 kb on - strand, within A4249_RS03495 at 728.702 kb on + strand, within A4249_RS03495 at 728.703 kb on - strand, within A4249_RS03495 at 728.703 kb on - strand, within A4249_RS03495 at 728.729 kb on - strand, within A4249_RS03495 at 728.774 kb on - strand, within A4249_RS03495 at 729.147 kb on + strand at 729.147 kb on + strand at 729.147 kb on + strand at 729.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 726,443 + A4249_RS03485 0.11 -0.6 726,443 + A4249_RS03485 0.11 -0.3 726,444 - A4249_RS03485 0.12 -0.3 726,444 - A4249_RS03485 0.12 +0.2 726,444 - A4249_RS03485 0.12 -0.1 726,444 - A4249_RS03485 0.12 -1.2 726,485 + A4249_RS03485 0.20 +1.1 726,485 + A4249_RS03485 0.20 +0.1 726,485 + A4249_RS03485 0.20 -0.3 726,486 - A4249_RS03485 0.20 +0.9 726,486 - A4249_RS03485 0.20 +1.1 726,486 - A4249_RS03485 0.20 +0.2 726,486 - A4249_RS03485 0.20 +0.1 726,564 + A4249_RS03485 0.35 +0.2 726,564 + A4249_RS03485 0.35 +0.4 726,564 + A4249_RS03485 0.35 +0.6 726,564 + A4249_RS03485 0.35 -1.3 726,564 + A4249_RS03485 0.35 +0.1 726,565 - A4249_RS03485 0.35 +2.0 726,565 - A4249_RS03485 0.35 +0.1 726,759 + A4249_RS03485 0.73 +0.5 726,759 + A4249_RS03485 0.73 -1.0 726,760 - A4249_RS03485 0.73 -0.4 726,897 + -0.6 726,989 + +0.9 726,989 + +0.7 726,989 + +0.7 726,989 + +0.9 726,989 + +0.7 726,989 + +0.8 726,989 + -1.3 726,989 + +0.5 726,989 + +0.4 726,989 + -0.1 726,989 + -0.3 726,990 - -0.3 726,990 - +0.4 726,990 - +0.1 726,990 - -0.8 726,990 - -1.0 726,990 - -0.6 726,990 - +0.6 726,990 - +0.1 726,990 - -0.0 726,990 - -0.4 726,990 - +0.8 726,990 - -0.1 727,020 + +0.3 727,021 - -0.5 727,074 + +0.5 727,074 + +0.6 727,074 + +0.2 727,074 + -0.9 727,075 - +0.4 727,075 - +0.6 727,075 - -0.2 727,075 - -0.5 727,075 - -0.7 727,075 - +0.2 727,131 + -0.1 727,131 + -0.1 727,132 - -0.3 727,132 - -0.3 727,217 + +0.0 727,217 + -0.2 727,217 + -0.9 727,217 + -0.2 727,218 - -0.5 727,261 - +0.1 727,355 + -0.2 727,355 + +0.4 727,355 + +1.4 727,355 + +0.0 727,355 + +0.1 727,355 + -0.6 727,355 + +0.1 727,355 + +0.2 727,355 + +0.8 727,355 + -0.5 727,355 + -0.3 727,355 + +0.3 727,356 - -1.0 727,356 - +0.5 727,356 - +0.5 727,356 - +0.1 727,356 - -0.5 727,356 - -0.1 727,356 - -0.7 727,356 - -0.4 727,356 - -0.4 727,356 - +0.5 727,356 - +1.2 727,356 - -0.5 727,356 - -0.0 727,356 - -0.6 727,436 + +0.2 727,436 + -0.4 727,436 + -0.1 727,436 + -1.0 727,436 + -0.3 727,437 - +0.1 727,437 - -0.3 727,437 - -0.1 727,437 - +0.5 727,437 - -0.3 727,437 - +0.0 727,437 - +0.4 727,439 + -0.5 727,439 + +0.8 727,439 + +1.0 727,439 + -0.1 727,439 + +1.1 727,439 + -0.3 727,439 + -0.1 727,439 + +1.3 727,439 + +0.2 727,439 + +0.4 727,439 + -0.1 727,439 + -0.7 727,440 - -0.3 727,440 - -0.1 727,440 - +0.5 727,472 - A4249_RS03490 0.13 +0.7 727,515 - A4249_RS03490 0.18 +0.5 727,565 - A4249_RS03490 0.24 +0.5 727,658 + A4249_RS03490 0.35 -1.2 727,659 - A4249_RS03490 0.35 +0.8 727,841 + A4249_RS03490 0.55 -0.3 727,841 + A4249_RS03490 0.55 +0.5 727,841 + A4249_RS03490 0.55 -0.3 727,841 + A4249_RS03490 0.55 +0.3 727,841 + A4249_RS03490 0.55 +0.5 727,842 - A4249_RS03490 0.56 -0.0 727,842 - A4249_RS03490 0.56 +0.4 727,842 - A4249_RS03490 0.56 -1.0 727,842 - A4249_RS03490 0.56 +0.2 727,842 - A4249_RS03490 0.56 +0.4 727,842 - A4249_RS03490 0.56 +1.0 728,195 + +0.7 728,196 - +0.0 728,301 + -0.3 728,301 + +1.4 728,301 + -1.2 728,301 + -0.1 728,301 + -0.3 728,301 + -0.2 728,302 - +0.2 728,302 - -0.1 728,302 - +0.2 728,302 - -0.1 728,302 - +0.2 728,302 - -0.1 728,302 - -0.0 728,302 - -0.3 728,302 - -0.8 728,302 - -0.4 728,305 + -0.3 728,305 + +0.1 728,305 + -0.3 728,305 + -0.2 728,305 + -1.1 728,306 - -0.3 728,306 - +0.9 728,526 + A4249_RS03495 0.24 -0.5 728,526 + A4249_RS03495 0.24 -0.5 728,526 + A4249_RS03495 0.24 +0.8 728,526 + A4249_RS03495 0.24 +0.8 728,526 + A4249_RS03495 0.24 +0.1 728,526 + A4249_RS03495 0.24 +0.4 728,527 - A4249_RS03495 0.24 +0.3 728,527 - A4249_RS03495 0.24 -0.0 728,527 - A4249_RS03495 0.24 -0.1 728,527 - A4249_RS03495 0.24 -0.9 728,527 - A4249_RS03495 0.24 +0.0 728,527 - A4249_RS03495 0.24 +0.4 728,528 - A4249_RS03495 0.25 -0.5 728,536 + A4249_RS03495 0.26 +0.4 728,536 + A4249_RS03495 0.26 -1.1 728,536 + A4249_RS03495 0.26 +0.6 728,537 - A4249_RS03495 0.26 +0.6 728,537 - A4249_RS03495 0.26 +0.3 728,539 + A4249_RS03495 0.26 +0.1 728,539 + A4249_RS03495 0.26 +0.7 728,539 + A4249_RS03495 0.26 +0.6 728,539 + A4249_RS03495 0.26 +1.0 728,539 + A4249_RS03495 0.26 -0.7 728,539 + A4249_RS03495 0.26 +0.1 728,539 + A4249_RS03495 0.26 +0.1 728,539 + A4249_RS03495 0.26 +0.1 728,539 + A4249_RS03495 0.26 -0.6 728,539 + A4249_RS03495 0.26 -0.2 728,539 + A4249_RS03495 0.26 +0.1 728,540 - A4249_RS03495 0.26 -0.2 728,540 - A4249_RS03495 0.26 -0.3 728,540 - A4249_RS03495 0.26 +0.4 728,540 - A4249_RS03495 0.26 +0.4 728,540 - A4249_RS03495 0.26 +0.1 728,540 - A4249_RS03495 0.26 +0.8 728,540 - A4249_RS03495 0.26 -0.7 728,540 - A4249_RS03495 0.26 -0.1 728,656 + A4249_RS03495 0.40 +0.6 728,656 + A4249_RS03495 0.40 +0.6 728,656 + A4249_RS03495 0.40 -1.0 728,661 + A4249_RS03495 0.41 -1.9 728,688 + A4249_RS03495 0.44 +0.4 728,689 - A4249_RS03495 0.44 +0.2 728,702 + A4249_RS03495 0.46 -0.8 728,703 - A4249_RS03495 0.46 -0.3 728,703 - A4249_RS03495 0.46 -0.1 728,729 - A4249_RS03495 0.49 -0.3 728,774 - A4249_RS03495 0.55 +0.7 729,147 + +0.2 729,147 + +0.4 729,147 + -0.3 729,147 + +0.3
Or see this region's nucleotide sequence