Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03015

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03005 and A4249_RS03010 are separated by 128 nucleotidesA4249_RS03010 and A4249_RS03015 are separated by 72 nucleotidesA4249_RS03015 and A4249_RS16490 are separated by 22 nucleotidesA4249_RS16490 and A4249_RS03020 are separated by 43 nucleotides A4249_RS03005: A4249_RS03005 - glycosyltransferase family 4 protein, at 636,757 to 637,854 _RS03005 A4249_RS03010: A4249_RS03010 - peptidylprolyl isomerase, at 637,983 to 638,444 _RS03010 A4249_RS03015: A4249_RS03015 - RlmE family RNA methyltransferase, at 638,517 to 639,227 _RS03015 A4249_RS16490: A4249_RS16490 - hypothetical protein, at 639,250 to 639,627 _RS16490 A4249_RS03020: A4249_RS03020 - DUF2061 domain-containing protein, at 639,671 to 640,216 _RS03020 Position (kb) 638 639 640Strain fitness (log2 ratio) -3 -2 -1 0 1at 637.517 kb on + strand, within A4249_RS03005at 637.517 kb on + strand, within A4249_RS03005at 637.518 kb on - strand, within A4249_RS03005at 637.518 kb on - strand, within A4249_RS03005at 637.943 kb on + strandat 637.944 kb on - strandat 638.089 kb on + strand, within A4249_RS03010at 638.089 kb on + strand, within A4249_RS03010at 638.089 kb on + strand, within A4249_RS03010at 638.089 kb on + strand, within A4249_RS03010at 638.090 kb on - strand, within A4249_RS03010at 638.100 kb on + strand, within A4249_RS03010at 638.101 kb on - strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.314 kb on + strand, within A4249_RS03010at 638.315 kb on - strand, within A4249_RS03010at 638.315 kb on - strand, within A4249_RS03010at 638.315 kb on - strand, within A4249_RS03010at 638.315 kb on - strand, within A4249_RS03010at 638.482 kb on + strandat 638.482 kb on + strandat 638.482 kb on + strandat 638.483 kb on - strandat 638.483 kb on - strandat 638.483 kb on - strandat 638.483 kb on - strandat 638.483 kb on - strandat 638.505 kb on + strandat 638.505 kb on + strandat 638.505 kb on + strandat 638.506 kb on - strandat 638.506 kb on - strandat 638.506 kb on - strandat 639.225 kb on + strandat 639.370 kb on + strand, within A4249_RS16490at 639.370 kb on + strand, within A4249_RS16490at 639.371 kb on - strand, within A4249_RS16490at 639.425 kb on - strand, within A4249_RS16490at 639.461 kb on - strand, within A4249_RS16490at 639.502 kb on + strand, within A4249_RS16490at 639.502 kb on + strand, within A4249_RS16490at 639.503 kb on - strand, within A4249_RS16490at 639.503 kb on - strand, within A4249_RS16490at 639.563 kb on + strand, within A4249_RS16490at 639.563 kb on + strand, within A4249_RS16490at 639.563 kb on + strand, within A4249_RS16490at 639.564 kb on - strand, within A4249_RS16490at 639.564 kb on - strand, within A4249_RS16490at 639.564 kb on - strand, within A4249_RS16490at 639.564 kb on - strand, within A4249_RS16490at 639.567 kb on + strand, within A4249_RS16490at 639.568 kb on - strand, within A4249_RS16490at 639.628 kb on + strandat 639.628 kb on + strandat 639.629 kb on - strandat 639.629 kb on - strandat 639.629 kb on - strandat 639.629 kb on - strandat 639.629 kb on - strandat 639.648 kb on - strandat 639.648 kb on - strandat 639.666 kb on + strandat 639.673 kb on - strandat 639.673 kb on - strandat 639.813 kb on + strand, within A4249_RS03020at 639.813 kb on + strand, within A4249_RS03020at 639.813 kb on + strand, within A4249_RS03020at 639.814 kb on - strand, within A4249_RS03020at 639.814 kb on - strand, within A4249_RS03020at 639.814 kb on - strand, within A4249_RS03020at 639.814 kb on - strand, within A4249_RS03020at 639.814 kb on - strand, within A4249_RS03020at 639.852 kb on + strand, within A4249_RS03020at 639.852 kb on + strand, within A4249_RS03020at 639.852 kb on + strand, within A4249_RS03020at 639.852 kb on + strand, within A4249_RS03020at 639.852 kb on + strand, within A4249_RS03020at 639.853 kb on - strand, within A4249_RS03020at 639.853 kb on - strand, within A4249_RS03020at 639.853 kb on - strand, within A4249_RS03020at 639.992 kb on + strand, within A4249_RS03020at 639.992 kb on + strand, within A4249_RS03020at 639.992 kb on + strand, within A4249_RS03020at 639.992 kb on + strand, within A4249_RS03020at 639.993 kb on - strand, within A4249_RS03020at 639.993 kb on - strand, within A4249_RS03020at 639.993 kb on - strand, within A4249_RS03020at 639.993 kb on - strand, within A4249_RS03020at 639.993 kb on - strand, within A4249_RS03020at 639.993 kb on - strand, within A4249_RS03020at 639.994 kb on + strand, within A4249_RS03020at 639.994 kb on + strand, within A4249_RS03020at 639.995 kb on - strand, within A4249_RS03020at 639.995 kb on - strand, within A4249_RS03020at 639.995 kb on - strand, within A4249_RS03020at 639.995 kb on - strand, within A4249_RS03020at 640.051 kb on - strand, within A4249_RS03020at 640.051 kb on - strand, within A4249_RS03020at 640.161 kb on + strand, within A4249_RS03020at 640.161 kb on + strand, within A4249_RS03020at 640.161 kb on + strand, within A4249_RS03020at 640.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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637,517 + A4249_RS03005 0.69 -0.1
637,517 + A4249_RS03005 0.69 +1.0
637,518 - A4249_RS03005 0.69 +0.4
637,518 - A4249_RS03005 0.69 +0.1
637,943 + -0.6
637,944 - +0.5
638,089 + A4249_RS03010 0.23 +0.8
638,089 + A4249_RS03010 0.23 -0.3
638,089 + A4249_RS03010 0.23 -0.4
638,089 + A4249_RS03010 0.23 -1.3
638,090 - A4249_RS03010 0.23 +0.6
638,100 + A4249_RS03010 0.25 +0.0
638,101 - A4249_RS03010 0.26 +0.6
638,314 + A4249_RS03010 0.72 +0.0
638,314 + A4249_RS03010 0.72 -0.5
638,314 + A4249_RS03010 0.72 +0.2
638,314 + A4249_RS03010 0.72 +0.3
638,314 + A4249_RS03010 0.72 -0.9
638,314 + A4249_RS03010 0.72 +0.4
638,314 + A4249_RS03010 0.72 -1.9
638,314 + A4249_RS03010 0.72 -1.4
638,314 + A4249_RS03010 0.72 +0.6
638,314 + A4249_RS03010 0.72 -0.7
638,314 + A4249_RS03010 0.72 +0.3
638,315 - A4249_RS03010 0.72 -0.5
638,315 - A4249_RS03010 0.72 -0.0
638,315 - A4249_RS03010 0.72 +0.7
638,315 - A4249_RS03010 0.72 -0.2
638,482 + -0.2
638,482 + +0.1
638,482 + +0.7
638,483 - -1.1
638,483 - +0.1
638,483 - -0.0
638,483 - -0.7
638,483 - -0.2
638,505 + +0.6
638,505 + -1.2
638,505 + -0.5
638,506 - -0.2
638,506 - +0.1
638,506 - -0.3
639,225 + -0.1
639,370 + A4249_RS16490 0.32 -0.2
639,370 + A4249_RS16490 0.32 -0.3
639,371 - A4249_RS16490 0.32 -0.2
639,425 - A4249_RS16490 0.46 +0.1
639,461 - A4249_RS16490 0.56 +0.7
639,502 + A4249_RS16490 0.67 +0.6
639,502 + A4249_RS16490 0.67 +0.5
639,503 - A4249_RS16490 0.67 -0.3
639,503 - A4249_RS16490 0.67 -0.8
639,563 + A4249_RS16490 0.83 +0.3
639,563 + A4249_RS16490 0.83 -0.1
639,563 + A4249_RS16490 0.83 +0.2
639,564 - A4249_RS16490 0.83 -1.7
639,564 - A4249_RS16490 0.83 -0.4
639,564 - A4249_RS16490 0.83 -0.2
639,564 - A4249_RS16490 0.83 +0.1
639,567 + A4249_RS16490 0.84 +0.3
639,568 - A4249_RS16490 0.84 -0.9
639,628 + -0.1
639,628 + +0.1
639,629 - +0.4
639,629 - -0.7
639,629 - -0.5
639,629 - +0.6
639,629 - +0.1
639,648 - -0.0
639,648 - +0.8
639,666 + -2.9
639,673 - -0.9
639,673 - -0.8
639,813 + A4249_RS03020 0.26 +0.5
639,813 + A4249_RS03020 0.26 -0.9
639,813 + A4249_RS03020 0.26 +0.1
639,814 - A4249_RS03020 0.26 -0.0
639,814 - A4249_RS03020 0.26 +0.1
639,814 - A4249_RS03020 0.26 -0.1
639,814 - A4249_RS03020 0.26 -0.3
639,814 - A4249_RS03020 0.26 +0.1
639,852 + A4249_RS03020 0.33 +0.1
639,852 + A4249_RS03020 0.33 -0.3
639,852 + A4249_RS03020 0.33 +0.1
639,852 + A4249_RS03020 0.33 -1.7
639,852 + A4249_RS03020 0.33 -0.1
639,853 - A4249_RS03020 0.33 +0.4
639,853 - A4249_RS03020 0.33 +0.2
639,853 - A4249_RS03020 0.33 +0.2
639,992 + A4249_RS03020 0.59 +1.3
639,992 + A4249_RS03020 0.59 -1.3
639,992 + A4249_RS03020 0.59 -0.8
639,992 + A4249_RS03020 0.59 -1.5
639,993 - A4249_RS03020 0.59 -0.0
639,993 - A4249_RS03020 0.59 +0.3
639,993 - A4249_RS03020 0.59 +0.2
639,993 - A4249_RS03020 0.59 -0.2
639,993 - A4249_RS03020 0.59 -0.5
639,993 - A4249_RS03020 0.59 -0.3
639,994 + A4249_RS03020 0.59 +0.2
639,994 + A4249_RS03020 0.59 -0.6
639,995 - A4249_RS03020 0.59 -0.3
639,995 - A4249_RS03020 0.59 +0.2
639,995 - A4249_RS03020 0.59 +1.0
639,995 - A4249_RS03020 0.59 -0.6
640,051 - A4249_RS03020 0.70 -0.5
640,051 - A4249_RS03020 0.70 +0.2
640,161 + A4249_RS03020 0.90 +0.1
640,161 + A4249_RS03020 0.90 -2.5
640,161 + A4249_RS03020 0.90 +0.8
640,162 - -0.8

Or see this region's nucleotide sequence