Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02620 and A4249_RS02625 are separated by 51 nucleotides A4249_RS02625 and A4249_RS02630 are separated by 90 nucleotides
A4249_RS02620: A4249_RS02620 - DNA repair protein RecN, at 561,312 to 563,009
_RS02620
A4249_RS02625: A4249_RS02625 - hypothetical protein, at 563,061 to 563,648
_RS02625
A4249_RS02630: A4249_RS02630 - S8 family serine peptidase, at 563,739 to 564,995
_RS02630
Position (kb) 563
564 Strain fitness (log2 ratio) -2
-1
0
1 at 562.221 kb on + strand, within A4249_RS02620 at 562.221 kb on + strand, within A4249_RS02620 at 562.222 kb on - strand, within A4249_RS02620 at 562.222 kb on - strand, within A4249_RS02620 at 562.413 kb on + strand, within A4249_RS02620 at 562.414 kb on - strand, within A4249_RS02620 at 562.414 kb on - strand, within A4249_RS02620 at 562.421 kb on - strand, within A4249_RS02620 at 563.007 kb on + strand at 563.008 kb on - strand at 563.121 kb on + strand, within A4249_RS02625 at 563.654 kb on + strand at 563.654 kb on + strand at 563.654 kb on + strand at 563.654 kb on + strand at 563.654 kb on + strand at 563.654 kb on + strand at 563.654 kb on + strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.655 kb on - strand at 563.815 kb on + strand at 563.816 kb on - strand at 563.816 kb on - strand at 563.816 kb on - strand at 563.980 kb on + strand, within A4249_RS02630 at 563.980 kb on + strand, within A4249_RS02630 at 564.277 kb on + strand, within A4249_RS02630 at 564.277 kb on + strand, within A4249_RS02630 at 564.278 kb on - strand, within A4249_RS02630 at 564.278 kb on - strand, within A4249_RS02630 at 564.278 kb on - strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.408 kb on + strand, within A4249_RS02630 at 564.409 kb on - strand, within A4249_RS02630 at 564.409 kb on - strand, within A4249_RS02630 at 564.409 kb on - strand, within A4249_RS02630 at 564.409 kb on - strand, within A4249_RS02630 at 564.409 kb on - strand, within A4249_RS02630
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 562,221 + A4249_RS02620 0.54 -0.0 562,221 + A4249_RS02620 0.54 -0.1 562,222 - A4249_RS02620 0.54 -0.5 562,222 - A4249_RS02620 0.54 -0.4 562,413 + A4249_RS02620 0.65 -0.2 562,414 - A4249_RS02620 0.65 -0.3 562,414 - A4249_RS02620 0.65 -1.7 562,421 - A4249_RS02620 0.65 -0.8 563,007 + +0.1 563,008 - -0.2 563,121 + A4249_RS02625 0.10 +0.4 563,654 + -0.2 563,654 + +0.0 563,654 + -0.4 563,654 + +0.4 563,654 + -0.6 563,654 + -1.7 563,654 + +0.2 563,655 - -1.4 563,655 - -0.5 563,655 - -0.7 563,655 - -0.0 563,655 - -1.0 563,655 - +0.3 563,655 - +0.4 563,655 - -0.1 563,655 - -0.4 563,655 - +0.3 563,815 + +0.1 563,816 - +0.1 563,816 - -0.0 563,816 - -0.6 563,980 + A4249_RS02630 0.19 -2.6 563,980 + A4249_RS02630 0.19 -0.5 564,277 + A4249_RS02630 0.43 +0.6 564,277 + A4249_RS02630 0.43 -1.0 564,278 - A4249_RS02630 0.43 +0.1 564,278 - A4249_RS02630 0.43 -0.2 564,278 - A4249_RS02630 0.43 +0.4 564,408 + A4249_RS02630 0.53 +0.0 564,408 + A4249_RS02630 0.53 +0.2 564,408 + A4249_RS02630 0.53 -0.0 564,408 + A4249_RS02630 0.53 -0.1 564,408 + A4249_RS02630 0.53 +0.1 564,408 + A4249_RS02630 0.53 -0.2 564,408 + A4249_RS02630 0.53 +1.0 564,408 + A4249_RS02630 0.53 -0.2 564,408 + A4249_RS02630 0.53 +0.9 564,408 + A4249_RS02630 0.53 -0.2 564,409 - A4249_RS02630 0.53 +0.6 564,409 - A4249_RS02630 0.53 -0.6 564,409 - A4249_RS02630 0.53 -0.6 564,409 - A4249_RS02630 0.53 -0.4 564,409 - A4249_RS02630 0.53 +0.2
Or see this region's nucleotide sequence