Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02035

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02030 and A4249_RS02035 are separated by 294 nucleotidesA4249_RS02035 and A4249_RS02040 are separated by 70 nucleotides A4249_RS02030: A4249_RS02030 - sialidase family protein, at 416,651 to 418,918 _RS02030 A4249_RS02035: A4249_RS02035 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 419,213 to 421,768 _RS02035 A4249_RS02040: A4249_RS02040 - cation:proton antiporter, at 421,839 to 423,089 _RS02040 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1at 418.221 kb on + strand, within A4249_RS02030at 418.221 kb on + strand, within A4249_RS02030at 418.221 kb on + strand, within A4249_RS02030at 418.222 kb on - strand, within A4249_RS02030at 418.373 kb on - strand, within A4249_RS02030at 418.440 kb on + strand, within A4249_RS02030at 418.440 kb on + strand, within A4249_RS02030at 418.440 kb on + strand, within A4249_RS02030at 418.440 kb on + strand, within A4249_RS02030at 418.441 kb on - strand, within A4249_RS02030at 418.441 kb on - strand, within A4249_RS02030at 418.441 kb on - strand, within A4249_RS02030at 418.441 kb on - strand, within A4249_RS02030at 418.447 kb on + strand, within A4249_RS02030at 418.447 kb on + strand, within A4249_RS02030at 418.447 kb on + strand, within A4249_RS02030at 418.448 kb on - strand, within A4249_RS02030at 418.448 kb on - strand, within A4249_RS02030at 418.448 kb on - strand, within A4249_RS02030at 418.448 kb on - strand, within A4249_RS02030at 418.448 kb on - strand, within A4249_RS02030at 418.448 kb on - strand, within A4249_RS02030at 418.616 kb on - strand, within A4249_RS02030at 418.616 kb on - strand, within A4249_RS02030at 418.616 kb on - strand, within A4249_RS02030at 418.749 kb on + strandat 418.749 kb on + strandat 418.750 kb on - strandat 418.750 kb on - strandat 418.750 kb on - strandat 418.750 kb on - strandat 418.830 kb on + strandat 418.830 kb on + strandat 418.830 kb on + strandat 418.831 kb on - strandat 418.831 kb on - strandat 418.831 kb on - strandat 418.831 kb on - strandat 419.008 kb on - strandat 419.009 kb on + strandat 419.009 kb on + strandat 419.009 kb on + strandat 419.009 kb on + strandat 419.010 kb on - strandat 419.010 kb on - strandat 419.010 kb on - strandat 419.224 kb on + strandat 419.225 kb on - strandat 419.225 kb on - strandat 419.540 kb on + strand, within A4249_RS02035at 419.541 kb on - strand, within A4249_RS02035at 419.541 kb on - strand, within A4249_RS02035at 419.681 kb on + strand, within A4249_RS02035at 419.681 kb on + strand, within A4249_RS02035at 419.682 kb on - strand, within A4249_RS02035at 419.682 kb on - strand, within A4249_RS02035at 419.682 kb on - strand, within A4249_RS02035at 419.894 kb on + strand, within A4249_RS02035at 419.894 kb on + strand, within A4249_RS02035at 419.895 kb on - strand, within A4249_RS02035at 419.895 kb on - strand, within A4249_RS02035at 419.895 kb on - strand, within A4249_RS02035at 419.895 kb on - strand, within A4249_RS02035at 419.895 kb on - strand, within A4249_RS02035at 419.895 kb on - strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.924 kb on + strand, within A4249_RS02035at 419.925 kb on - strand, within A4249_RS02035at 419.925 kb on - strand, within A4249_RS02035at 419.925 kb on - strand, within A4249_RS02035at 419.992 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.353 kb on + strand, within A4249_RS02035at 420.354 kb on - strand, within A4249_RS02035at 420.354 kb on - strand, within A4249_RS02035at 420.354 kb on - strand, within A4249_RS02035at 420.354 kb on - strand, within A4249_RS02035at 420.354 kb on - strand, within A4249_RS02035at 420.547 kb on - strand, within A4249_RS02035at 420.824 kb on + strand, within A4249_RS02035at 420.824 kb on + strand, within A4249_RS02035at 420.824 kb on + strand, within A4249_RS02035at 420.825 kb on - strand, within A4249_RS02035at 420.825 kb on - strand, within A4249_RS02035at 421.160 kb on + strand, within A4249_RS02035at 421.160 kb on + strand, within A4249_RS02035at 421.161 kb on - strand, within A4249_RS02035at 421.161 kb on - strand, within A4249_RS02035at 421.161 kb on - strand, within A4249_RS02035at 421.161 kb on - strand, within A4249_RS02035at 421.166 kb on + strand, within A4249_RS02035at 421.178 kb on + strand, within A4249_RS02035at 421.178 kb on + strand, within A4249_RS02035at 421.178 kb on + strand, within A4249_RS02035at 421.178 kb on + strand, within A4249_RS02035at 421.178 kb on + strand, within A4249_RS02035at 421.178 kb on + strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.179 kb on - strand, within A4249_RS02035at 421.253 kb on + strand, within A4249_RS02035at 421.253 kb on + strand, within A4249_RS02035at 421.254 kb on - strand, within A4249_RS02035at 421.254 kb on - strand, within A4249_RS02035at 421.254 kb on - strand, within A4249_RS02035at 421.567 kb on + strandat 421.568 kb on - strandat 421.568 kb on - strandat 421.767 kb on - strandat 421.890 kb on + strandat 421.891 kb on - strandat 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.046 kb on + strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040at 422.047 kb on - strand, within A4249_RS02040

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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418,221 + A4249_RS02030 0.69 +0.2
418,221 + A4249_RS02030 0.69 -0.1
418,221 + A4249_RS02030 0.69 -0.5
418,222 - A4249_RS02030 0.69 +0.1
418,373 - A4249_RS02030 0.76 +0.7
418,440 + A4249_RS02030 0.79 +0.1
418,440 + A4249_RS02030 0.79 -0.1
418,440 + A4249_RS02030 0.79 -0.2
418,440 + A4249_RS02030 0.79 -1.5
418,441 - A4249_RS02030 0.79 -0.3
418,441 - A4249_RS02030 0.79 -0.1
418,441 - A4249_RS02030 0.79 -0.5
418,441 - A4249_RS02030 0.79 -0.4
418,447 + A4249_RS02030 0.79 -1.2
418,447 + A4249_RS02030 0.79 +0.4
418,447 + A4249_RS02030 0.79 -0.3
418,448 - A4249_RS02030 0.79 -0.3
418,448 - A4249_RS02030 0.79 -0.2
418,448 - A4249_RS02030 0.79 -2.7
418,448 - A4249_RS02030 0.79 -2.9
418,448 - A4249_RS02030 0.79 +0.8
418,448 - A4249_RS02030 0.79 -0.0
418,616 - A4249_RS02030 0.87 -0.2
418,616 - A4249_RS02030 0.87 +0.1
418,616 - A4249_RS02030 0.87 +0.1
418,749 + -0.2
418,749 + -1.2
418,750 - +0.2
418,750 - +0.3
418,750 - +1.0
418,750 - +0.0
418,830 + -0.6
418,830 + -1.1
418,830 + -0.1
418,831 - +1.7
418,831 - +0.7
418,831 - -0.9
418,831 - +0.3
419,008 - -0.6
419,009 + -0.0
419,009 + -0.0
419,009 + +0.3
419,009 + -1.1
419,010 - -0.4
419,010 - -0.7
419,010 - +0.9
419,224 + +0.3
419,225 - +0.3
419,225 - -0.0
419,540 + A4249_RS02035 0.13 +0.5
419,541 - A4249_RS02035 0.13 -0.7
419,541 - A4249_RS02035 0.13 -0.8
419,681 + A4249_RS02035 0.18 +0.4
419,681 + A4249_RS02035 0.18 +0.6
419,682 - A4249_RS02035 0.18 -1.1
419,682 - A4249_RS02035 0.18 -0.7
419,682 - A4249_RS02035 0.18 +0.4
419,894 + A4249_RS02035 0.27 -0.6
419,894 + A4249_RS02035 0.27 +0.3
419,895 - A4249_RS02035 0.27 -1.6
419,895 - A4249_RS02035 0.27 +0.2
419,895 - A4249_RS02035 0.27 +1.4
419,895 - A4249_RS02035 0.27 +0.1
419,895 - A4249_RS02035 0.27 -0.2
419,895 - A4249_RS02035 0.27 -0.4
419,924 + A4249_RS02035 0.28 -0.6
419,924 + A4249_RS02035 0.28 +0.5
419,924 + A4249_RS02035 0.28 -0.1
419,924 + A4249_RS02035 0.28 -0.3
419,924 + A4249_RS02035 0.28 +0.7
419,924 + A4249_RS02035 0.28 -0.6
419,924 + A4249_RS02035 0.28 -0.3
419,924 + A4249_RS02035 0.28 -0.1
419,925 - A4249_RS02035 0.28 -0.4
419,925 - A4249_RS02035 0.28 -0.2
419,925 - A4249_RS02035 0.28 +0.2
419,992 + A4249_RS02035 0.30 +0.5
420,353 + A4249_RS02035 0.45 +0.6
420,353 + A4249_RS02035 0.45 -0.1
420,353 + A4249_RS02035 0.45 -0.6
420,353 + A4249_RS02035 0.45 -0.6
420,353 + A4249_RS02035 0.45 +0.0
420,353 + A4249_RS02035 0.45 -1.8
420,353 + A4249_RS02035 0.45 -0.1
420,353 + A4249_RS02035 0.45 -0.9
420,353 + A4249_RS02035 0.45 +0.9
420,353 + A4249_RS02035 0.45 +0.0
420,354 - A4249_RS02035 0.45 +0.3
420,354 - A4249_RS02035 0.45 -0.3
420,354 - A4249_RS02035 0.45 -0.3
420,354 - A4249_RS02035 0.45 -0.1
420,354 - A4249_RS02035 0.45 +0.2
420,547 - A4249_RS02035 0.52 -0.5
420,824 + A4249_RS02035 0.63 +0.3
420,824 + A4249_RS02035 0.63 -0.0
420,824 + A4249_RS02035 0.63 +0.1
420,825 - A4249_RS02035 0.63 -0.0
420,825 - A4249_RS02035 0.63 -0.2
421,160 + A4249_RS02035 0.76 +0.1
421,160 + A4249_RS02035 0.76 -0.5
421,161 - A4249_RS02035 0.76 +0.9
421,161 - A4249_RS02035 0.76 -0.7
421,161 - A4249_RS02035 0.76 -0.6
421,161 - A4249_RS02035 0.76 -0.0
421,166 + A4249_RS02035 0.76 +0.0
421,178 + A4249_RS02035 0.77 -0.3
421,178 + A4249_RS02035 0.77 +0.1
421,178 + A4249_RS02035 0.77 -0.4
421,178 + A4249_RS02035 0.77 +0.7
421,178 + A4249_RS02035 0.77 +0.3
421,178 + A4249_RS02035 0.77 +0.1
421,179 - A4249_RS02035 0.77 -0.4
421,179 - A4249_RS02035 0.77 +0.4
421,179 - A4249_RS02035 0.77 -0.1
421,179 - A4249_RS02035 0.77 -0.2
421,179 - A4249_RS02035 0.77 +0.5
421,179 - A4249_RS02035 0.77 -0.6
421,179 - A4249_RS02035 0.77 +0.1
421,179 - A4249_RS02035 0.77 +0.7
421,253 + A4249_RS02035 0.80 +0.2
421,253 + A4249_RS02035 0.80 -0.1
421,254 - A4249_RS02035 0.80 -0.1
421,254 - A4249_RS02035 0.80 +1.0
421,254 - A4249_RS02035 0.80 +0.2
421,567 + +0.5
421,568 - +0.7
421,568 - +0.1
421,767 - -0.8
421,890 + +0.0
421,891 - +0.0
422,046 + A4249_RS02040 0.17 -0.2
422,046 + A4249_RS02040 0.17 +0.2
422,046 + A4249_RS02040 0.17 -0.3
422,046 + A4249_RS02040 0.17 -1.2
422,046 + A4249_RS02040 0.17 -0.2
422,046 + A4249_RS02040 0.17 +0.8
422,046 + A4249_RS02040 0.17 -0.3
422,046 + A4249_RS02040 0.17 -0.3
422,046 + A4249_RS02040 0.17 -0.2
422,046 + A4249_RS02040 0.17 -1.0
422,047 - A4249_RS02040 0.17 -0.6
422,047 - A4249_RS02040 0.17 -1.0
422,047 - A4249_RS02040 0.17 +0.9
422,047 - A4249_RS02040 0.17 -0.1
422,047 - A4249_RS02040 0.17 +0.6
422,047 - A4249_RS02040 0.17 -0.3
422,047 - A4249_RS02040 0.17 -0.6

Or see this region's nucleotide sequence