Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddpB and ddpA are separated by 1 nucleotides ddpA and ddpX are separated by 13 nucleotides ddpX and HEPCGN_26485 are separated by 257 nucleotides
HEPCGN_26470: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 4,042,186 to 4,043,208
ddpB
HEPCGN_26475: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 4,043,210 to 4,044,760
ddpA
HEPCGN_26480: ddpX - D-alanyl-D-alanine dipeptidase, at 4,044,774 to 4,045,355
ddpX
HEPCGN_26485: HEPCGN_26485 - Heme-regulated cyclic AMP phosphodiesterase (Direct oxygen sensor protein), at 4,045,613 to 4,046,248
_26485
Position (kb) 4043
4044
4045 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4042.263 kb on - strand at 4042.327 kb on + strand, within ddpB at 4042.327 kb on + strand, within ddpB at 4042.385 kb on + strand, within ddpB at 4042.456 kb on + strand, within ddpB at 4042.505 kb on + strand, within ddpB at 4042.505 kb on + strand, within ddpB at 4042.801 kb on + strand, within ddpB at 4042.849 kb on + strand, within ddpB at 4042.850 kb on - strand, within ddpB at 4042.850 kb on - strand, within ddpB at 4043.006 kb on + strand, within ddpB at 4043.007 kb on - strand, within ddpB at 4043.015 kb on - strand, within ddpB at 4043.018 kb on + strand, within ddpB at 4043.018 kb on + strand, within ddpB at 4043.116 kb on - strand at 4043.130 kb on + strand at 4043.137 kb on - strand at 4043.211 kb on + strand at 4043.211 kb on + strand at 4043.216 kb on - strand at 4043.216 kb on - strand at 4043.316 kb on + strand at 4043.322 kb on + strand at 4043.322 kb on + strand at 4043.323 kb on - strand at 4043.323 kb on - strand at 4043.411 kb on + strand, within ddpA at 4043.436 kb on + strand, within ddpA at 4043.436 kb on + strand, within ddpA at 4043.492 kb on - strand, within ddpA at 4043.497 kb on + strand, within ddpA at 4043.497 kb on + strand, within ddpA at 4043.497 kb on + strand, within ddpA at 4043.497 kb on + strand, within ddpA at 4043.676 kb on + strand, within ddpA at 4043.751 kb on + strand, within ddpA at 4043.751 kb on + strand, within ddpA at 4043.920 kb on - strand, within ddpA at 4043.925 kb on + strand, within ddpA at 4043.925 kb on + strand, within ddpA at 4044.101 kb on - strand, within ddpA at 4044.101 kb on - strand, within ddpA at 4044.135 kb on - strand, within ddpA at 4044.233 kb on + strand, within ddpA at 4044.234 kb on - strand, within ddpA at 4044.234 kb on - strand, within ddpA at 4044.234 kb on - strand, within ddpA at 4044.311 kb on - strand, within ddpA at 4044.323 kb on - strand, within ddpA at 4044.509 kb on - strand, within ddpA at 4044.610 kb on + strand at 4044.611 kb on - strand at 4044.671 kb on - strand at 4044.734 kb on - strand at 4044.776 kb on - strand at 4044.803 kb on + strand at 4045.068 kb on - strand, within ddpX at 4045.156 kb on + strand, within ddpX at 4045.170 kb on + strand, within ddpX at 4045.191 kb on - strand, within ddpX at 4045.197 kb on - strand, within ddpX at 4045.214 kb on + strand, within ddpX at 4045.253 kb on - strand, within ddpX at 4045.288 kb on + strand, within ddpX at 4045.371 kb on - strand at 4045.687 kb on - strand, within HEPCGN_26485 at 4045.719 kb on - strand, within HEPCGN_26485
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 4,042,263 - +1.6 4,042,327 + ddpB HEPCGN_26470 0.14 -1.1 4,042,327 + ddpB HEPCGN_26470 0.14 -2.2 4,042,385 + ddpB HEPCGN_26470 0.19 -1.2 4,042,456 + ddpB HEPCGN_26470 0.26 -0.4 4,042,505 + ddpB HEPCGN_26470 0.31 +0.5 4,042,505 + ddpB HEPCGN_26470 0.31 +0.1 4,042,801 + ddpB HEPCGN_26470 0.60 +1.3 4,042,849 + ddpB HEPCGN_26470 0.65 +0.1 4,042,850 - ddpB HEPCGN_26470 0.65 +0.2 4,042,850 - ddpB HEPCGN_26470 0.65 -0.7 4,043,006 + ddpB HEPCGN_26470 0.80 +0.6 4,043,007 - ddpB HEPCGN_26470 0.80 +0.5 4,043,015 - ddpB HEPCGN_26470 0.81 +0.4 4,043,018 + ddpB HEPCGN_26470 0.81 -0.5 4,043,018 + ddpB HEPCGN_26470 0.81 -0.3 4,043,116 - -0.9 4,043,130 + +0.4 4,043,137 - +0.5 4,043,211 + -0.3 4,043,211 + +0.5 4,043,216 - -0.4 4,043,216 - -1.6 4,043,316 + +0.8 4,043,322 + -0.3 4,043,322 + -1.6 4,043,323 - +0.4 4,043,323 - -0.0 4,043,411 + ddpA HEPCGN_26475 0.13 -1.0 4,043,436 + ddpA HEPCGN_26475 0.15 +0.6 4,043,436 + ddpA HEPCGN_26475 0.15 +0.3 4,043,492 - ddpA HEPCGN_26475 0.18 -0.8 4,043,497 + ddpA HEPCGN_26475 0.19 +0.2 4,043,497 + ddpA HEPCGN_26475 0.19 +1.1 4,043,497 + ddpA HEPCGN_26475 0.19 -0.4 4,043,497 + ddpA HEPCGN_26475 0.19 -0.7 4,043,676 + ddpA HEPCGN_26475 0.30 +0.1 4,043,751 + ddpA HEPCGN_26475 0.35 +0.3 4,043,751 + ddpA HEPCGN_26475 0.35 -0.2 4,043,920 - ddpA HEPCGN_26475 0.46 -0.4 4,043,925 + ddpA HEPCGN_26475 0.46 +0.3 4,043,925 + ddpA HEPCGN_26475 0.46 +0.4 4,044,101 - ddpA HEPCGN_26475 0.57 -0.8 4,044,101 - ddpA HEPCGN_26475 0.57 -0.3 4,044,135 - ddpA HEPCGN_26475 0.60 +0.3 4,044,233 + ddpA HEPCGN_26475 0.66 +1.2 4,044,234 - ddpA HEPCGN_26475 0.66 -0.5 4,044,234 - ddpA HEPCGN_26475 0.66 +0.7 4,044,234 - ddpA HEPCGN_26475 0.66 +0.2 4,044,311 - ddpA HEPCGN_26475 0.71 +1.0 4,044,323 - ddpA HEPCGN_26475 0.72 +0.1 4,044,509 - ddpA HEPCGN_26475 0.84 +0.1 4,044,610 + +0.5 4,044,611 - -0.0 4,044,671 - -0.1 4,044,734 - +0.3 4,044,776 - -1.3 4,044,803 + +2.3 4,045,068 - ddpX HEPCGN_26480 0.51 -1.0 4,045,156 + ddpX HEPCGN_26480 0.66 -0.2 4,045,170 + ddpX HEPCGN_26480 0.68 -0.2 4,045,191 - ddpX HEPCGN_26480 0.72 -0.6 4,045,197 - ddpX HEPCGN_26480 0.73 -0.2 4,045,214 + ddpX HEPCGN_26480 0.76 +0.2 4,045,253 - ddpX HEPCGN_26480 0.82 -0.6 4,045,288 + ddpX HEPCGN_26480 0.88 -0.4 4,045,371 - +0.3 4,045,687 - HEPCGN_26485 0.12 -2.0 4,045,719 - HEPCGN_26485 0.17 -0.4
Or see this region's nucleotide sequence