Strain Fitness in Escherichia coli ECOR38 around HEPCGN_24820

Experiment: Control_ECOR38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECOR38
3,715,490	+	ycgR	HEPCGN_24810	0.41	+0.1
3,715,504	+	ycgR	HEPCGN_24810	0.43	+0.9
3,715,510	-	ycgR	HEPCGN_24810	0.44	+0.0
3,715,510	-	ycgR	HEPCGN_24810	0.44	+0.7
3,715,510	-	ycgR	HEPCGN_24810	0.44	+0.7
3,715,620	+	ycgR	HEPCGN_24810	0.59	+0.5
3,715,655	-	ycgR	HEPCGN_24810	0.64	+0.3
3,715,668	+	ycgR	HEPCGN_24810	0.66	+0.6
3,715,668	+	ycgR	HEPCGN_24810	0.66	-0.0
3,715,738	-	ycgR	HEPCGN_24810	0.75	-0.3
3,715,824	+	ycgR	HEPCGN_24810	0.87	-1.1
3,715,825	-	ycgR	HEPCGN_24810	0.87	-0.2
3,715,910	+				+0.2
3,716,061	+				-0.6
3,716,065	+				-0.5
3,716,065	+				+1.5
3,716,065	+				-0.2
3,716,066	-				-0.3
3,716,078	+				+1.1
3,716,129	+				-0.2
3,716,142	-				+0.1
3,716,164	+	ymgE	HEPCGN_24815	0.17	+0.2
3,716,176	+	ymgE	HEPCGN_24815	0.22	+0.4
3,716,177	-	ymgE	HEPCGN_24815	0.22	-1.3
3,716,177	-	ymgE	HEPCGN_24815	0.22	-0.1
3,716,219	+	ymgE	HEPCGN_24815	0.38	+0.1
3,716,219	+	ymgE	HEPCGN_24815	0.38	+1.4
3,716,400	-				-1.0
3,716,433	+				+0.2
3,716,433	+				-0.0
3,716,433	+				+0.2
3,716,434	-				+1.1
3,716,434	-				+0.8
3,716,492	+				+0.1
3,716,493	-				-0.2
3,716,493	-				+2.1
3,716,512	-				-0.2
3,716,545	+				+0.9
3,716,545	+				-0.2
3,716,546	-				-0.6
3,716,546	-				+0.4
3,716,770	+	fepA	HEPCGN_24820	0.18	+0.4
3,716,771	-	fepA	HEPCGN_24820	0.18	+0.5
3,716,781	+	fepA	HEPCGN_24820	0.18	+1.1
3,716,802	+	fepA	HEPCGN_24820	0.19	-0.3
3,716,903	+	fepA	HEPCGN_24820	0.24	+0.2
3,716,904	-	fepA	HEPCGN_24820	0.24	-0.3
3,717,015	+	fepA	HEPCGN_24820	0.30	+0.6
3,717,036	+	fepA	HEPCGN_24820	0.31	+0.2
3,717,036	+	fepA	HEPCGN_24820	0.31	+0.2
3,717,036	+	fepA	HEPCGN_24820	0.31	+0.5
3,717,036	+	fepA	HEPCGN_24820	0.31	-0.3
3,717,036	+	fepA	HEPCGN_24820	0.31	-0.9
3,717,039	-	fepA	HEPCGN_24820	0.31	+0.4
3,717,074	+	fepA	HEPCGN_24820	0.33	-0.3
3,717,077	+	fepA	HEPCGN_24820	0.33	-0.3
3,717,078	-	fepA	HEPCGN_24820	0.33	-0.7
3,717,135	+	fepA	HEPCGN_24820	0.36	-2.2
3,717,161	+	fepA	HEPCGN_24820	0.37	-0.3
3,717,202	+	fepA	HEPCGN_24820	0.39	-0.3
3,717,202	+	fepA	HEPCGN_24820	0.39	-0.6
3,717,202	+	fepA	HEPCGN_24820	0.39	-0.2
3,717,203	-	fepA	HEPCGN_24820	0.39	-0.7
3,717,203	-	fepA	HEPCGN_24820	0.39	+0.4
3,717,221	+	fepA	HEPCGN_24820	0.40	-0.9
3,717,221	+	fepA	HEPCGN_24820	0.40	-0.5
3,717,221	+	fepA	HEPCGN_24820	0.40	-0.1
3,717,269	+	fepA	HEPCGN_24820	0.43	+0.1
3,717,270	-	fepA	HEPCGN_24820	0.43	+0.6
3,717,343	+	fepA	HEPCGN_24820	0.47	-2.6
3,717,361	-	fepA	HEPCGN_24820	0.47	+0.6
3,717,428	+	fepA	HEPCGN_24820	0.51	+2.1
3,717,519	-	fepA	HEPCGN_24820	0.56	+0.9
3,717,628	-	fepA	HEPCGN_24820	0.61	-0.1
3,717,687	-	fepA	HEPCGN_24820	0.64	+0.5
3,717,687	-	fepA	HEPCGN_24820	0.64	+0.8
3,717,687	-	fepA	HEPCGN_24820	0.64	+0.6
3,717,709	-	fepA	HEPCGN_24820	0.65	-0.7
3,717,753	+	fepA	HEPCGN_24820	0.67	+0.7
3,717,790	+	fepA	HEPCGN_24820	0.69	-0.6
3,717,791	-	fepA	HEPCGN_24820	0.69	+0.9
3,717,885	+	fepA	HEPCGN_24820	0.74	-0.1
3,717,972	+	fepA	HEPCGN_24820	0.78	+0.9
3,717,972	+	fepA	HEPCGN_24820	0.78	+0.1
3,717,973	-	fepA	HEPCGN_24820	0.79	-0.4
3,717,997	-	fepA	HEPCGN_24820	0.80	-0.3
3,718,088	+	fepA	HEPCGN_24820	0.84	+0.4
3,718,088	+	fepA	HEPCGN_24820	0.84	+0.4
3,718,097	+	fepA	HEPCGN_24820	0.85	-1.0
3,718,098	-	fepA	HEPCGN_24820	0.85	+0.4
3,718,098	-	fepA	HEPCGN_24820	0.85	+0.3
3,718,098	-	fepA	HEPCGN_24820	0.85	+0.4
3,718,098	-	fepA	HEPCGN_24820	0.85	+0.5
3,718,118	+	fepA	HEPCGN_24820	0.86	+0.1
3,718,360	+				-0.3
3,718,395	+				-0.6
3,718,396	-				+0.9
3,718,473	+				-0.1
3,718,476	+				-0.2
3,718,492	+				+0.4
3,718,519	-	modD	HEPCGN_24825	0.11	+0.3
3,718,589	+	modD	HEPCGN_24825	0.20	+0.3
3,718,589	+	modD	HEPCGN_24825	0.20	-0.7
3,718,590	-	modD	HEPCGN_24825	0.20	-1.7
3,718,701	-	modD	HEPCGN_24825	0.33	-0.7
3,718,928	+	modD	HEPCGN_24825	0.59	+0.8
3,718,929	-	modD	HEPCGN_24825	0.59	+0.3
3,718,929	-	modD	HEPCGN_24825	0.59	-1.5
3,718,950	+	modD	HEPCGN_24825	0.62	+0.2
3,719,168	+	modD	HEPCGN_24825	0.87	+0.5
3,719,170	+	modD	HEPCGN_24825	0.88	+0.5
3,719,170	+	modD	HEPCGN_24825	0.88	+0.6
3,719,171	-	modD	HEPCGN_24825	0.88	-0.1
3,719,171	-	modD	HEPCGN_24825	0.88	+0.5
3,719,171	-	modD	HEPCGN_24825	0.88	-0.8
3,719,171	-	modD	HEPCGN_24825	0.88	-0.2
3,719,172	+	modD	HEPCGN_24825	0.88	-0.8
3,719,172	+	modD	HEPCGN_24825	0.88	-0.1
3,719,173	-	modD	HEPCGN_24825	0.88	-0.9
3,719,195	+				-1.3
3,719,240	+				+1.1
3,719,372	+		HEPCGN_24830	0.12	+0.4
3,719,374	+		HEPCGN_24830	0.13	+0.2
3,719,375	-		HEPCGN_24830	0.13	-1.5