Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20555

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlepB and rnc are separated by 272 nucleotidesrnc and era overlap by 4 nucleotidesera and recO are separated by 11 nucleotides HEPCGN_20550: lepB - signal peptidase I, at 2,849,052 to 2,850,026 lepB HEPCGN_20555: rnc - ribonuclease III, at 2,850,299 to 2,850,979 rnc HEPCGN_20560: era - GTPase Era, at 2,850,976 to 2,851,881 era HEPCGN_20565: recO - DNA repair protein RecO, at 2,851,893 to 2,852,621 recO Position (kb) 2850 2851Strain fitness (log2 ratio) -3 -2 -1 0 1at 2850.024 kb on + strandat 2850.025 kb on - strandat 2850.025 kb on - strandat 2850.025 kb on - strandat 2850.074 kb on + strandat 2850.074 kb on + strandat 2850.075 kb on - strandat 2850.078 kb on + strandat 2850.078 kb on + strandat 2850.079 kb on - strandat 2850.085 kb on + strandat 2850.130 kb on + strandat 2850.197 kb on + strandat 2850.199 kb on + strandat 2850.243 kb on + strandat 2850.243 kb on + strandat 2850.243 kb on + strandat 2850.243 kb on + strandat 2850.243 kb on + strandat 2850.243 kb on + strandat 2850.245 kb on + strandat 2850.245 kb on + strandat 2850.245 kb on + strandat 2850.245 kb on + strandat 2850.406 kb on + strand, within rncat 2851.925 kb on + strandat 2851.926 kb on - strandat 2851.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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2,850,024 + -0.8
2,850,025 - -0.1
2,850,025 - +1.1
2,850,025 - +1.0
2,850,074 + +0.7
2,850,074 + -1.0
2,850,075 - +0.5
2,850,078 + -0.4
2,850,078 + -0.0
2,850,079 - +0.5
2,850,085 + -2.2
2,850,130 + -0.4
2,850,197 + -1.1
2,850,199 + +0.5
2,850,243 + +0.4
2,850,243 + +0.3
2,850,243 + -0.5
2,850,243 + +0.2
2,850,243 + -0.6
2,850,243 + +0.3
2,850,245 + -0.0
2,850,245 + -0.3
2,850,245 + +0.4
2,850,245 + -0.2
2,850,406 + rnc HEPCGN_20555 0.16 -1.5
2,851,925 + +0.3
2,851,926 - -0.2
2,851,926 - -3.0

Or see this region's nucleotide sequence