Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rffA and rffC are separated by 4 nucleotides rffC and rfbA overlap by 23 nucleotides rfbA and rffG are separated by 18 nucleotides
HEPCGN_13255: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,394,474 to 1,395,604
rffA
HEPCGN_13260: rffC - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 1,395,609 to 1,396,283
rffC
HEPCGN_13265: rfbA - glucose-1-phosphate thymidylyltransferase RfbA, at 1,396,261 to 1,397,142
rfbA
HEPCGN_13270: rffG - dTDP-glucose 4,6-dehydratase, at 1,397,161 to 1,398,228
rffG
Position (kb) 1395
1396
1397 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1394.643 kb on + strand, within rffA at 1394.720 kb on - strand, within rffA at 1394.724 kb on + strand, within rffA at 1394.724 kb on + strand, within rffA at 1394.731 kb on + strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.814 kb on + strand, within rffA at 1394.815 kb on - strand, within rffA at 1394.815 kb on - strand, within rffA at 1394.907 kb on + strand, within rffA at 1394.934 kb on + strand, within rffA at 1394.935 kb on - strand, within rffA at 1394.938 kb on + strand, within rffA at 1395.079 kb on + strand, within rffA at 1395.080 kb on - strand, within rffA at 1395.091 kb on + strand, within rffA at 1395.092 kb on - strand, within rffA at 1395.124 kb on - strand, within rffA at 1395.164 kb on + strand, within rffA at 1395.165 kb on - strand, within rffA at 1395.169 kb on + strand, within rffA at 1395.169 kb on + strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.190 kb on + strand, within rffA at 1395.191 kb on - strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.194 kb on - strand, within rffA at 1395.194 kb on - strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.556 kb on + strand at 1395.556 kb on + strand at 1395.557 kb on - strand at 1395.557 kb on - strand at 1395.558 kb on + strand at 1395.559 kb on - strand at 1395.616 kb on + strand at 1395.616 kb on + strand at 1395.617 kb on - strand at 1395.617 kb on - strand at 1395.639 kb on + strand at 1395.640 kb on - strand at 1395.657 kb on + strand at 1395.657 kb on + strand at 1395.657 kb on + strand at 1395.657 kb on + strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.658 kb on - strand at 1395.661 kb on + strand at 1395.727 kb on + strand, within rffC at 1395.728 kb on - strand, within rffC at 1395.728 kb on - strand, within rffC at 1395.728 kb on - strand, within rffC at 1395.916 kb on + strand, within rffC at 1395.917 kb on - strand, within rffC at 1395.996 kb on + strand, within rffC at 1396.027 kb on - strand, within rffC at 1396.027 kb on - strand, within rffC at 1396.083 kb on + strand, within rffC at 1396.205 kb on + strand, within rffC at 1396.205 kb on + strand, within rffC at 1396.206 kb on - strand, within rffC at 1396.288 kb on + strand at 1396.405 kb on - strand, within rfbA at 1396.433 kb on - strand, within rfbA at 1396.433 kb on - strand, within rfbA at 1396.440 kb on + strand, within rfbA at 1396.440 kb on + strand, within rfbA at 1396.441 kb on - strand, within rfbA at 1396.441 kb on - strand, within rfbA at 1396.552 kb on - strand, within rfbA at 1396.595 kb on + strand, within rfbA at 1396.596 kb on - strand, within rfbA at 1396.596 kb on - strand, within rfbA at 1396.608 kb on + strand, within rfbA at 1396.609 kb on - strand, within rfbA at 1396.616 kb on + strand, within rfbA at 1396.622 kb on + strand, within rfbA at 1396.680 kb on + strand, within rfbA at 1396.680 kb on + strand, within rfbA at 1396.681 kb on - strand, within rfbA at 1396.747 kb on + strand, within rfbA at 1396.747 kb on + strand, within rfbA at 1396.872 kb on + strand, within rfbA at 1396.972 kb on - strand, within rfbA at 1396.972 kb on - strand, within rfbA at 1396.983 kb on + strand, within rfbA at 1396.986 kb on + strand, within rfbA at 1396.986 kb on + strand, within rfbA at 1396.986 kb on + strand, within rfbA at 1396.986 kb on + strand, within rfbA at 1396.987 kb on - strand, within rfbA at 1396.987 kb on - strand, within rfbA at 1397.039 kb on + strand, within rfbA at 1397.039 kb on + strand, within rfbA at 1397.058 kb on - strand at 1397.058 kb on - strand at 1397.134 kb on - strand at 1397.192 kb on + strand at 1397.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 1,394,643 + rffA HEPCGN_13255 0.15 +0.0 1,394,720 - rffA HEPCGN_13255 0.22 -0.2 1,394,724 + rffA HEPCGN_13255 0.22 +0.3 1,394,724 + rffA HEPCGN_13255 0.22 +0.3 1,394,731 + rffA HEPCGN_13255 0.23 -0.4 1,394,732 - rffA HEPCGN_13255 0.23 +0.6 1,394,732 - rffA HEPCGN_13255 0.23 -0.1 1,394,732 - rffA HEPCGN_13255 0.23 -0.3 1,394,732 - rffA HEPCGN_13255 0.23 -0.8 1,394,732 - rffA HEPCGN_13255 0.23 -0.6 1,394,814 + rffA HEPCGN_13255 0.30 -1.3 1,394,815 - rffA HEPCGN_13255 0.30 +1.1 1,394,815 - rffA HEPCGN_13255 0.30 +0.0 1,394,907 + rffA HEPCGN_13255 0.38 +0.1 1,394,934 + rffA HEPCGN_13255 0.41 -0.4 1,394,935 - rffA HEPCGN_13255 0.41 +0.1 1,394,938 + rffA HEPCGN_13255 0.41 +1.1 1,395,079 + rffA HEPCGN_13255 0.53 +0.4 1,395,080 - rffA HEPCGN_13255 0.54 +0.3 1,395,091 + rffA HEPCGN_13255 0.55 -1.1 1,395,092 - rffA HEPCGN_13255 0.55 +0.3 1,395,124 - rffA HEPCGN_13255 0.57 +1.0 1,395,164 + rffA HEPCGN_13255 0.61 -0.3 1,395,165 - rffA HEPCGN_13255 0.61 +0.1 1,395,169 + rffA HEPCGN_13255 0.61 +1.1 1,395,169 + rffA HEPCGN_13255 0.61 +0.7 1,395,170 - rffA HEPCGN_13255 0.62 +0.0 1,395,170 - rffA HEPCGN_13255 0.62 +0.1 1,395,170 - rffA HEPCGN_13255 0.62 +0.5 1,395,170 - rffA HEPCGN_13255 0.62 +1.0 1,395,190 + rffA HEPCGN_13255 0.63 +0.1 1,395,191 - rffA HEPCGN_13255 0.63 +0.1 1,395,193 + rffA HEPCGN_13255 0.64 -0.8 1,395,193 + rffA HEPCGN_13255 0.64 +1.1 1,395,193 + rffA HEPCGN_13255 0.64 -0.2 1,395,193 + rffA HEPCGN_13255 0.64 +0.3 1,395,193 + rffA HEPCGN_13255 0.64 -2.0 1,395,194 - rffA HEPCGN_13255 0.64 -1.2 1,395,194 - rffA HEPCGN_13255 0.64 -1.9 1,395,369 + rffA HEPCGN_13255 0.79 +0.5 1,395,369 + rffA HEPCGN_13255 0.79 -0.1 1,395,369 + rffA HEPCGN_13255 0.79 +1.0 1,395,369 + rffA HEPCGN_13255 0.79 -0.3 1,395,556 + -1.4 1,395,556 + +0.9 1,395,557 - -0.2 1,395,557 - -0.2 1,395,558 + -0.7 1,395,559 - -0.5 1,395,616 + +0.5 1,395,616 + -1.0 1,395,617 - -0.7 1,395,617 - -0.3 1,395,639 + -0.2 1,395,640 - -0.2 1,395,657 + -1.0 1,395,657 + -2.1 1,395,657 + +0.5 1,395,657 + -0.1 1,395,658 - -1.9 1,395,658 - -0.6 1,395,658 - -1.3 1,395,658 - +1.0 1,395,658 - +0.1 1,395,658 - +0.9 1,395,658 - -0.5 1,395,658 - +0.4 1,395,661 + +1.6 1,395,727 + rffC HEPCGN_13260 0.17 -0.0 1,395,728 - rffC HEPCGN_13260 0.18 +0.4 1,395,728 - rffC HEPCGN_13260 0.18 -1.2 1,395,728 - rffC HEPCGN_13260 0.18 -0.5 1,395,916 + rffC HEPCGN_13260 0.45 -0.2 1,395,917 - rffC HEPCGN_13260 0.46 -1.9 1,395,996 + rffC HEPCGN_13260 0.57 -0.5 1,396,027 - rffC HEPCGN_13260 0.62 -1.5 1,396,027 - rffC HEPCGN_13260 0.62 -0.1 1,396,083 + rffC HEPCGN_13260 0.70 -0.2 1,396,205 + rffC HEPCGN_13260 0.88 -0.3 1,396,205 + rffC HEPCGN_13260 0.88 +0.2 1,396,206 - rffC HEPCGN_13260 0.88 +0.8 1,396,288 + +0.6 1,396,405 - rfbA HEPCGN_13265 0.16 +0.1 1,396,433 - rfbA HEPCGN_13265 0.20 +0.8 1,396,433 - rfbA HEPCGN_13265 0.20 +2.3 1,396,440 + rfbA HEPCGN_13265 0.20 +0.2 1,396,440 + rfbA HEPCGN_13265 0.20 +0.1 1,396,441 - rfbA HEPCGN_13265 0.20 -0.6 1,396,441 - rfbA HEPCGN_13265 0.20 +1.4 1,396,552 - rfbA HEPCGN_13265 0.33 -0.2 1,396,595 + rfbA HEPCGN_13265 0.38 +0.7 1,396,596 - rfbA HEPCGN_13265 0.38 +0.5 1,396,596 - rfbA HEPCGN_13265 0.38 +0.4 1,396,608 + rfbA HEPCGN_13265 0.39 -0.2 1,396,609 - rfbA HEPCGN_13265 0.39 +0.7 1,396,616 + rfbA HEPCGN_13265 0.40 -0.2 1,396,622 + rfbA HEPCGN_13265 0.41 -0.0 1,396,680 + rfbA HEPCGN_13265 0.48 -0.3 1,396,680 + rfbA HEPCGN_13265 0.48 +0.2 1,396,681 - rfbA HEPCGN_13265 0.48 -0.5 1,396,747 + rfbA HEPCGN_13265 0.55 -0.0 1,396,747 + rfbA HEPCGN_13265 0.55 +0.1 1,396,872 + rfbA HEPCGN_13265 0.69 +0.5 1,396,972 - rfbA HEPCGN_13265 0.81 +0.5 1,396,972 - rfbA HEPCGN_13265 0.81 -0.5 1,396,983 + rfbA HEPCGN_13265 0.82 -0.2 1,396,986 + rfbA HEPCGN_13265 0.82 +0.4 1,396,986 + rfbA HEPCGN_13265 0.82 +0.4 1,396,986 + rfbA HEPCGN_13265 0.82 +0.6 1,396,986 + rfbA HEPCGN_13265 0.82 -0.2 1,396,987 - rfbA HEPCGN_13265 0.82 +0.0 1,396,987 - rfbA HEPCGN_13265 0.82 +0.1 1,397,039 + rfbA HEPCGN_13265 0.88 +0.5 1,397,039 + rfbA HEPCGN_13265 0.88 +1.1 1,397,058 - -0.6 1,397,058 - +0.5 1,397,134 - +0.7 1,397,192 + +0.7 1,397,238 - -0.2
Or see this region's nucleotide sequence